Zinc transporter-3 (ZnT3) protein controls synaptic vesicular Zn 2ϩ levels, which is predicted to regulate normal cognitive function. Surprisingly, previous studies found that 6-to 10-week-old ZnT3 knock-out (KO) mice did not show impairment in the Morris water maze. We hypothesized that older ZnT3 KO animals would display a cognitive phenotype. Here, we report that ZnT3 KO mice exhibit age-dependent deficits in learning and memory that are manifest at 6 months but not at 3 months of age. These deficits are associated with significant alterations in key hippocampal proteins involved in learning and memory, as assessed by Western blot. These include decreased levels of the presynaptic protein SNAP25 (Ϫ46%; p Ͻ 0.01); the postsynaptic protein PSD95 (Ϫ37%; p Ͻ 0.01); the glutamate receptors AMPAR (Ϫ34%; p Ͻ 0.01), NMDAR2a (Ϫ64%; p Ͻ 0.001), and NMDAR2b (Ϫ49%; p Ͻ 0.05); the surrogate marker of neurogenesis doublecortin (Ϫ31%; p Ͻ 0.001); and elements of the BDNF pathway, pro-BDNF (Ϫ30%; p Ͻ 0.05) and TrkB (Ϫ22%; p Ͻ 0.01). In addition, there is a concomitant decrease in neuronal spine density (Ϫ6%; p Ͻ 0.05). We also found that cortical ZnT3 levels fall with age in wild-type mice (Ϫ50%; p Ͻ 0.01) in healthy older humans (ages, 48 -91 years; r 2 ϭ 0.47; p ϭ 0.00019) and particularly in Alzheimer's disease (AD) (Ϫ36%; p Ͻ 0.0001). Thus, age-dependent loss of transsynaptic Zn 2ϩ movement leads to cognitive loss, and since extracellular -amyloid is aggregated by and traps this pool of Zn 2ϩ , the genetic ablation of ZnT3 may represent a phenocopy for the synaptic and memory deficits of AD.