The influence of rainfall and hydrological variables on the abundance and diversity of the copepod community was investigated on a monthly basis over an annual cycle in the Taperaçu mangrove estuary. In general, the results show that there were no clear spatial or tidal patterns in any biological variables during the study period, which was related to the reduced horizontal gradient in abiotic parameters, determined mainly by the morphological and morphodynamic features of the estuary. Nevertheless, seasonal and monthly trends were recorded in both the hydrological data and the abundance of the dominant copepod species. In particular, Pseudodiaptomus marshi (6,004.6 ± 22,231.6 ind m -3 ; F = 5.0, p \ 0.05) and Acartia tonsa (905.6 ± 2,400.9 ind m -3 ; F = 14.6, p \ 0.001) predominated during the rainy season, whereas Acartia lilljeborgii (750.8 ± 808.3 ind m -3 ; U = 413.0, p \ 0.01) was the most abundant species in the dry season. A distinct process of succession was observed in the relative abundance of these species, driven by the shift in the rainfall regime, which affected hydrological, in particular salinity, and consequently the abundance of copepod species. We suggest that this may be a general pattern governing the dynamics of copepod populations in the estuaries of the Brazilian Amazonian region.