Zooplankton species composition and abundance variation was studied in Lake Amvrakia, which is a deep, temperate, gypsum karst lake situated in the western Greece. The two year survey of zooplankton revealed 33 species (23 rotifers, five cladocerans, four copepods and one mollusc larva). The mean integrated abundance of the total zooplankton ranged between 83.6 and 442.7 ind. L −1 , with the higher density to be recorded in the surface 0-20 m layer. Small numbers of specimens of almost all species were found also in the hypoxic or anoxic hypolimnion. Copepods and especially the calanoid Eudiaptomus drieschi dominated the zooplankton community throughout the sampling period, followed by Dreissena polymorpha larvae, rotifers and cladocerans. Seasonal succession among the cladocerans and the most abundant rotifer species was observed. The concentration of chlorophyll-a was the most important factor for the variation of total zooplankton, as well as for the rotifers' community. Dissolved oxygen affected copepods and cladocerans, water level correlated mainly with the molluscs larvae of D. polymorpha, while temperature influenced the variation of several rotifers, the cladoceran Diaphanosoma orghidani and the mollusc larvae. Negative correlation of conductivity with the cladoceran Daphnia cucullata and the copepods E. drieschi and Macrocyclops albidus was found. The differences in species composition found in Lake Amvrakia in comparison to the nearby lakes are probably ought to the geographical isolation and perhaps to its particular chemistry (e.g., elevated conductivity).