Abstract. The content of fecal pellets of the freshly collected warm water appendicularian Megalocercus huxleyi was studied by light and electron microscopy and by flow cytometry in the superficial 100 m of the water column at 2øN, 165øE, in September 1994, during the Flux dans l'Ouest du ?acifique Equatorial (Joint Global Ocean Flux Study-France) oceanographic cruise. Microscopic observations showed that the fecal pellet contents of M. huxleyi reflected the natural composition of the nanophytoplankton and small microphytoplankton (<50 [tm). Larger cells were excluded from entering the filtering system by the inlet filters. Coccolithophorids appeared as the main component found in the feces. Evidence for ingestion of"naked" cells by this appendicularian is given. Analysis of picoplankton in fecal pellets by flow cytometer confirmed that appendicularians efficiently collect small particles. Cyanobacteria, -1 gm in diameter, were found in large quantities and showed high fluorescence in the fecal pellets. Most of these cyanobacteria in the pellets appeared to be intact, and thus may be good indicators of the appendicularian ingestion rate. The situation was different for the prochlorophyte Prochlorococcus abundant in the seawater and for picoeucaryotes (<2 gm). These were found at very low quantities in the larvacean fecal pellets. The calculations showed that with an average concentration of 5 3//. huxleyi m -3, >7% of the small particulate matter will be daily removed from the water. Some of this matter will be assimilated, some trapped in the houses, and the rest aggregated into rapidly sinking fecal pellets. Ingestion of large quantities of coccolithophorids indicates that appendicularians are important not only in the cycle of organic carbon but also of inorganic carbon. Moreover, if appendicularians successfully aggregate and assimilate oerochlorococcus and picoeucaryotes, then their grazing activity can represent a major pathway of carbon transformation in the tropical ecosystem