Sea surface temperatures (SST) and chlorophyll a concentrations (Chl a) in the southern Red Sea 18 have wide variations based on distance from the coast. To understand how these variations can 19 affect the diversity of symbionts hosted by reef-associated organisms, we conducted a study in the 20 central and southern Red Sea to examine the diversity of Symbiodiniaceae hosted by the 21 zooxanthellate zoantharian Palythoa tuberculosa at different distances from the coast: offshore 22 (FBO), midshelf (FBM) and inshore (FBI) of Farasan Banks, and inshore at Thuwal (TI). Genomic 23 DNA was extracted from 198 specimens, followed by amplification of the ribosomal DNA internal 24 transcribed spacer 2 (ITS-2) and non-coding region of the chloroplast plastid minicircle (psbA ncr ). 25Durusdinium and six lineages of Cladocopium (Pt-1-a, Pt-1-b, Pt-1-c, Pt-1-d, Pt-3-a, Pt-3-b) were 26 identified based on sequences of the two marker regions. Changes in composition of 27
ManuscriptClick here to access/download;Manuscript;Revise2_Manuscript_CLEAN_Red Click here to view linked References Symbiodiniaceae lineages were observed from FBI (high SST, high Chl a) to FBO (low SST, low 28 Chl a). Molecular variance analyses (AMOVA) showed that distance from coast was the most 29 likely predictor of differences in Cladocopium lineages. Multinomial Logistic Regression (MLR) 30 analysis showed a transition among different Cladocopium lineages as SST increased. One 31 Cladocopium lineage, Pt-1-b, demonstrated higher prevalences at high SSTs, and increased in 32 prevalences at the same rate as thermotolerant Durusdinium. Additionally, Cladocopium lineage 33 Pt-3-a had a high affinity to low Chl a concentrations. This study demonstrates that environmental 34 variations in SSTs and Chl a concentrations based apparently are significant predictors for the 35 diversity of dominant Symbiodiniaceae within individual host P. tuberculosa colonies. We 36 theorize that flexibility with different lineages of Symbiodiniaceae allows generalist P. 37 tuberculosa to live across a wide range of environments in the southern Red Sea. 38 39