Recently, we reported a new chiral stationary phase prepared using b-cyclodextrin functionalized with aromatic ionic liquid which is aimed to enhance the performance of enantioseparation of flavonoids and b-blockers. In this paper, the characteristics and performance of previously prepared chiral stationary phase denoted as b-CD-BIMOTs were compared with the newly synthesized chiral stationary phase denoted as b-CD-DIMOTs. b-CD-DIMOTs were prepared by functionalization of b-cyclodextrin with aliphatic ionic liquid. The obtained b-CD-BIMOTs and b-CD-DIMOTs stationary phases were compared with native b-CD stationary phase for the enantioseparation of non-steroidal anti-inflammatory drugs (NSAIDs) (ibuprofen, indoprofen, ketoprofen and fenoprofen). The b-CD-BIMOTs stationary phase showed greater chiral resolution capabilities rather than b-CD-DIMOTs and native b-CD stationary phases. Further, in order to understand the interaction of enantioseparation, the inclusion complex formation between NSAIDs and b-CD-BIMOTs was studied using 1 H NMR, NOESY and UV/Vis. The enantioseparated NSAIDs were found to form multiple interactions with b-CD-BIMOTs-CSP.