The effect of water stress on respiration and mitochondrial electron transport has been studied in soybean (Glycine max) leaves, using the oxygen-isotope-fractionation technique. Treatments with three levels of water stress were applied by irrigation to replace 100%, 50%, and 0% of daily water use by transpiration. The levels of water stress were characterized in terms of lightsaturated stomatal conductance (g s ): well irrigated (g s . . Although net photosynthesis decreased by 40% and 70% under mild and severe water stress, respectively, the total respiratory oxygen uptake (V t ) was not significantly different at any water-stress level. However, severe water stress caused a significant shift of electrons from the cytochrome to the alternative pathway. The electron partitioning through the alternative pathway increased from 10% to 12% under well-watered or mild water-stress conditions to near 40% under severe water stress. Consequently, the calculated rate of mitochondrial ATP synthesis decreased by 32% under severe water stress. Unlike many other stresses, water stress did not affect the levels of mitochondrial alternative oxidase protein. This suggests a biochemical regulation (other than protein synthesis) that causes this mitochondrial electron shift.Water stress is considered one of the most important factors limiting plant performance and yield worldwide (Boyer, 1982). Effects of water stress on a plant's physiology, including growth (McDonald and Davies, 1996), signaling pathways (Chaves et al., 2003), gene expression (Bray, 1997(Bray, , 2002, and leaf photosynthesis (Lawlor and Cornic, 2002;Flexas et al., 2004), have been studied extensively. Surprisingly, compared with other physiological processes, studies examining the effects of water stress on respiration are few (Hsiao, 1973; Amthor, 1989), despite the importance of respiration in ecosystem annual net productivity (Valentini et al., 1999) and the fact that ecosystem respiration is strongly affected by water availability (Bowling et al., 2002). Another important point to consider is the effect of water stress on the electron partitioning between the cytochrome and the cyanide-resistant, alternative pathway and its consequences for ATP synthesis. Unfortunately, the few studies that have focused on alternative respiration as affected by water stress (Zagdańska, 1995;Collier and Cummins, 1996; González-Meler et al., 1997) used specific inhibitors for the cytochrome (KCN) and alternative (salicylhydroxamic acid [SHAM]) respiratory pathways; this methodology is now known to be invalid (Millar et al., 1995;Day et al., 1996;Lambers et al., 2005). Currently, the only available system to measure electron partitioning between the two respiratory pathways and their actual activities is the use of the oxygen-isotope-fractionation technique McDonald et al., 2003;Ribas-Carbo et al., 2005). This technique is based on the fact that the two terminal oxidases fractionate 18 O differently, with the cytochrome oxidase discriminating less than the alternative oxid...