SummaryThe stem end rot pathogens of mango (Mangifera indica), (Dothiorella dominicana, Dothiorella mangiferae, Lasiodiplodia theobromae (Syn. Diplodia natalensis Phomopsis mangiferae, Cytosphaera mangiferae, Pestalotiopsis sp. and Dothiorella‘long’), as well as other fungi (including Alternaria alternata), were found to occur endophytically in the stem tissue of mango trees prior to inflorescence emergence. On samples from trees with a record of low stem end rot levels, colonisation did not extend into the most recently produced flush of stem tissue. At a site with a history of high stem end rot levels, sequential monitoring of inflorescence tissue between flowering and harvest by plating out small (c. 8 mm3) tissue pieces revealed, that at least some of the pathogens ‐ Dothiorella spp., P. mangiferae, Pestalotiopsis sp. and C. mangiferae gradually colonised the inflorescence, reaching the pedicel tissue of young fruit ‐ 8 wk after flowering. Subsequently, detection frequency of the pathogens in inflorescence tissue declined, possibly because of interference from copper residues (from field sprays) accumulating on tissue samples. The detection frequency of A. alternata also increased as Dothiorella spp. declined, however these changes could not be attributed to antagonistic interactions between the two fungi.Using larger tissue pieces (1–2 mm thick transverse sections, or a square of tissue 25 mm2× 3 mm thick) in isolations, endophytic colonisation by Dothiorella spp. and P. mangiferae was detected in stem, inflorescence and pedicel tissues of mature‐fruit‐specimens from two different sites, one unsprayed, and the other regularly sprayed with copper. The fungi were detected more frequently in the samples from unsprayed trees. Fruit from the sprayed orchard subsequently developed a high level of stem end rot caused by D. dominicana, while a lower level of stem end rot developed in unsprayed fruit, possibly because the latter fruit were also extensively diseased by anthracnose (Colletotrichum gloeosporioides Penz.). Endophytic colonisation of inflorescence and pedicel tissue was found to be a primary route of infection for fruit which develop stem end rot during ripening.

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During flowering and fruit set of mango (Mangifera indica L.), colonisation by fungi (Alternaria alternata, Cladosporium cladosporioides, Dothiorella dominicana, Dothiorella mangiferae, Dothiorella sp., Epicoccum purpurascens and Pestalotiopsis sp.) increased as the flowers senesced and young fruit formed.In the third week after flowering, the incidence of Dothiorella dominicana and Dothiorella mangiferae associated with mango fruit-pedicel connection tissue declined coincidentally with early fruit-fall, suggesting that early infections by Dothiorella spp. may cause fruitlet abortion. Dothiorella spp. levels in fruit-pedicel connection tissue remained low for the subsequent 6 weeks, after which they increased. By 16 weeks after flowering, the incidence of Dothiorella spp., determined by isolation from fruit-pedicel connection tissue, was similar to the incidence of stem end rot caused by Dothiorella spp., which developed in fruit harvested at that time. By contrast, the frequency of detection of Dothiorella spp. in peduncle tissue peaked 11 weeks after flowering, when the levels of stem end rot developing in fruit were already similar to the levels recorded in fruit harvested at 16 weeks and later.The results suggest that in fruit and fruit-pedicel tissue, colonisation might arise from Dothiorella spp. occurring endophytically in the peduncle. The earliest indicator of stem end rot incidence at harvest was the infection level in peduncle tissue sampled 11 weeks after flowering. Early assays of peduncle tissue for Dothiorella spp. might prove useful for selecting crops with low stem end rot infection levels.

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