Globally, water and food crises are exacerbated by climate change, population growth and changing lifestyles. These phenomena have resulted in escalating cycles of civil unrest and conflicts.  In South Africa, climate change has led to increased temperatures resulting in numerous deadly heat waves and varying rainfall patterns contributing to deadly flooding in most provinces and droughts in others. These extreme climatic conditions significantly impact agricultural production and water insecurity nationally. Despite the strong impact of climate change on water and food resources in the country, there is less education and inadequate data to address the impacts of climate change, especially at local levels; information is seldom used in planning and decision-making while there is a lack of actionable planning to mitigate the impacts of climate change. Using a mixed method approach of data collection and related literatures, this paper explored the weaknesses in the current climate change mitigation programmes in South Africa in the context of water and food security. The finding established that while multiple policies, regulations, and programmes are designed to minimise climate change's impact on water and food resources, the policies lack coherency at the formulation and implementation stages and are fragmented across various departments and institutions. This paper recommends a coordinated approach to tackling climate change and investment in research that will better understand the country's climate programmes in addressing water and food security.