We propose an iterative reconstruction scheme for optical diffraction tomography that exploits the split-step non-paraxial (SSNP) method as the forward model in a learning tomography scheme. Compared with the beam propagation method (BPM) previously used in learning tomography (LT-BPM), the improved accuracy of SSNP maximizes the information retrieved from measurements, relying less on prior assumptions about the sample. A rigorous evaluation of learning tomography based on SSNP (LT-SSNP) using both synthetic and experimental measurements confirms its superior performance compared with that of the LT-BPM. Benefiting from the accuracy of SSNP, LT-SSNP can clearly resolve structures that are highly distorted in the LT-BPM. A serious limitation for quantifying the reconstruction accuracy for biological samples is that the ground truth is unknown. To overcome this limitation, we describe a novel method that allows us to compare the performances of different reconstruction schemes by using the discrete dipole approximation to generate synthetic measurements. Finally, we explore the capacity of learning approaches to enable data compression by reducing the number of scanning angles, which is of particular interest in minimizing the measurement time.

Polarization of light has been widely used as a contrast mechanism in two-dimensional (2D) microscopy and also in some three-dimensional (3D) imaging modalities. In this paper, we report the 3D tomographic reconstruction of the refractive index (RI) tensor using 2D scattered fields measured for different illumination angles and polarizations. Conventional optical diffraction tomography (ODT) has been used as a quantitative, label-free 3D imaging method. It is based on the scalar formalism, which limits its application to isotropic samples. We achieve imaging of the birefringence of 3D objects through a reformulation of ODT based on vector diffraction theory. The off-diagonal components of the RI tensor reconstruction convey additional information that is not available in either conventional scalar ODT or 2D polarization microscopy. Finally, we show experimental reconstructions of 3D objects with a polarization-sensitive contrast metric quantitatively displaying the true birefringence of the samples.

A broad class of imaging modalities involve the resolution of an inverse-scattering problem. Among them, three-dimensional optical diffraction tomography (ODT) comes with its own challenges. These include a limited range of views, a large size of the sample with respect to the illumination wavelength, and optical aberrations that are inherent to the system itself. In this work, we present an accurate and efficient implementation of the forward model. It relies on the exact (nonlinear) Lippmann-Schwinger equation. We address several crucial issues such as the discretization of the Green function, the computation of the far field, and the estimation of the incident field. We then deploy this model in a regularized variational-reconstruction framework and show on both simulated and real data that it leads to substantially better reconstructions than the approximate models that are traditionally used in ODT. IntroductionOptical diffraction tomography (ODT) is a noninvasive quantitative imaging modality [1,2]. This label-free technique allows one to determine a three-dimensional map of the refractive index (RI) of samples, which is of particular interest for applications that range from biology [3] to nanotechnologies [4]. The acquisition setup sequentially illuminates the sample from different angles. For each illumination, the outgoing complex wave field (i.e., the scattered field) is recorded by a digital-holography microscope [5,6]. Then, from this set of measurements, the RI of the sample can be reconstructed by solving an inverse-scattering problem. However, its resolution is very challenging due to the nonlinear nature of the interaction between the light and the sample. Related WorksTo simplify the reconstruction problem, pioneering works focused on linearized models. These include Born [1] and Rytov [7] approximations, which are valid for weakly scattering samples [8]. Although originally used to deploy direct inversion methods, these linearized models have been later combined with iterative regularization techniques to improve their robustness to noise and to alleviate the missing-cone problem [9,10].Nonlinear models that adhere more closely to the physic of the acquisition are needed to recover samples with higher variations of their refractive index. For instance, beam-propagation methods (BPM) [11][12][13][14] rely on a slice-by-slice propagation model that accounts for multiple scatterings within the direction of propagation (no reflection). Other nonlinear models include the contrast source-inversion method [15] or the recursive Born approximation [16]. Although more accurate, all these models come at the price of a large computational cost.The theory of scalar diffraction recognizes the Lippmann-Schwinger (LS) model to be the most faithful. It accounts for multiple scatterings, both in transmission and reflection. Iterative forward models that solve the LS equation have

We accurately reconstruct three-dimensional (3-D) refractive index (RI) distributions from highly ill-posed two-dimensional (2-D) measurements using a deep neural network (DNN). Strong distortions are introduced on reconstructions obtained by the Wolf transform inversion method due to the ill-posed measurements acquired from the limited numerical apertures (NAs) of the optical system. Despite the recent success of DNNs in solving ill-posed inverse problems, the application to 3-D optical imaging is particularly challenging due to the lack of the ground truth. We overcome this limitation by generating digital phantoms that serve as samples for the discrete dipole approximation (DDA) to generate multiple 2-D projection maps for a limited range of illumination angles. The presented samples are red blood cells (RBCs), which are highly affected by the ill-posed problems due to their morphology. The trained network using synthetic measurements from the digital phantoms successfully eliminates the introduced distortions. Most importantly, we obtain high fidelity reconstructions from experimentally recorded projections of real RBC sample using the network that was trained on digitally generated RBC phantoms. Finally, we confirm the reconstruction accuracy using the DDA to calculate the 2-D projections of the 3-D reconstructions and compare them to the experimentally recorded projections.

Silver Nano-trees (AgNTs) were synthesized by one-step electroless method with different densities via water or ethylene glycol (EG) on silicon substrate in one minute. The density of AgNTs is controlled by changing the concentration of silver nitrate in etchant solution. The absorption of NTs fabricated via EG is higher than absorption of NTs without EG. The AgNTs are employed as substrates for surface-enhanced Raman scattering (SERS) and exhibit high sensitivity. The silver Nano-trees fabricated via ethylene glycol (AgNTs-EG) enhances the Raman spectrum of pyridine (Py) with higher enhancement factor. Moreover, the SERS-active substrates prepared by using EG were able to detect Pyridine with concentration as low as 0.005 mM, the ones fabricated by water could only detect Pyridine at concentration of 0.2 mM.