Advanced glycation end-products (AGEs) constitute a non-homogenous, chemically diverse group of compounds formed either exogeneously or endogeneously on the course of various pathways in the human body. In general, they are formed non-enzymatically by condensation between carbonyl groups of reducing sugars and free amine groups of nucleic acids, proteins, or lipids, followed by further rearrangements yielding stable, irreversible end-products. In the last decades, AGEs have aroused the interest of the scientific community due to the increasing evidence of their involvement in many pathophysiological processes and diseases, such as diabetes, cancer, cardiovascular, neurodegenerative diseases, and even infection with the SARS-CoV-2 virus. They are recognized by several cellular receptors and trigger many signaling pathways related to inflammation and oxidative stress. Despite many experimental research outcomes published recently, the complexity of their engagement in human physiology and pathophysiological states requires further elucidation. This review focuses on the receptors of AGEs, especially on the structural aspects of receptor–ligand interaction, and the diseases in which AGEs are involved. It also aims to present AGE classification in subgroups and to describe the basic processes leading to both exogeneous and endogeneous AGE formation.
More than 80% of Earth’s surface is exposed periodically or continuously to temperatures below 5 °C. Organisms that can live in these areas are called psychrophilic or psychrotolerant. They have evolved many adaptations that allow them to survive low temperatures. One of the most interesting modifications is production of specific substances that prevent living organisms from freezing. Psychrophiles can synthesize special peptides and proteins that modulate the growth of ice crystals and are generally called ice binding proteins (IBPs). Among them, antifreeze proteins (AFPs) inhibit the formation of large ice grains inside the cells that may damage cellular organelles or cause cell death. AFPs, with their unique properties of thermal hysteresis (TH) and ice recrystallization inhibition (IRI), have become one of the promising tools in industrial applications like cryobiology, food storage, and others. Attention of the industry was also caught by another group of IBPs exhibiting a different activity—ice-nucleating proteins (INPs). This review summarizes the current state of art and possible utilizations of the large group of IBPs.
Long-Chain ArylPiperazines (LCAPs) are well known serotonin receptor ligands. Several of them are used as active ingredients of marketed drugs, i.e. aripiprazole, buspirone, tandospirone. LCAPs consist of three main structural units: the aryl at N1 of the piperazine ring, the aliphatic chain (called either spacer or linker) at N4, joining the ring with the terminal aromatic system of variable size through amide or imide group.There is a vast literature concerning SAR of 5-HT 1A receptors ligands. Well established are influence of the aryl substitution and the spacer length of the aliphatic chain, most often tri-or tetramethylene, on 5-HT receptors affinities. Less is known on active conformation of the spacer and the role of the terminal moiety. In most models of the 5-HT 1A receptor and interactions with its ligands, protonation of piperazine N4 atom is assumed.In our latest study a series of the new LCAPs hydrochlorides with pyrimido[5,4-c]quinolin-4(3H)-ones as the terminal group and a range of methylene units in the spacer (n=2-4) have been obtained and their activity determined in vitro (project no. NN405165633 from Ministry of Science and Higher Education, Poland) [1]. Unexpected observation was that 5-HT 1A receptor affinities of LCAPs with n=2 and 4 were similar and generally much higher than those for analogous compounds with n=3.In efforts for structural explanation of the phenomenon, we have search CSD and were surprised by finding only several similar LCAP hydrochlorides, two with n=2 and three with n=3, which was not enough for SAR study. Solving twelve crystal structures of pirimidoquinolone type LCAPs with n=2-4 by ourselves enlarged significantly the structural data available and enabled us to point out a simple structural explanation. Namely, affinities of the LCAPs are related not only to the distance between the aromatic terminal group and the piperazine ring but also to their relative orientation, which critically depends on parity of n.[ Crystallization optimization, from a possible hit condition to producing a crystal of diffraction quality, is a critical but time consuming step in the macromolecular crystallization process. Major challenges include: 1) insufficient protein samples; 2) unrealistic experiments and/or conditions set up by hand; 3) eliminating false positives, such as salt crystals, and false negatives, such as protein micro crystals in a drop that is difficult to see with human eyes; 4) reproducibility due to human pipetting variations; and 5) organization and iteration of experiments. With new technology built into robotic instruments and software applications, many of the challenges mentioned above can be significantly reduced or completely eliminated. One such example is to consolidate various conventional crystallization optimization plates into one standard 96-well plate and to replace hand pipetting with robots [1], thereby increasing the throughput by multiple times while eliminating dispense variability issues. UV fluorescence imaging in addition to traditional bright...
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