In karst areas, anthropogenic contaminants reach the subsurface with detrimental effects on the groundwater ecosystem and downstream springs, which often serve as drinking water sources for the local human communities. We analyzed the water chemistry and microbial community composition in upstream and downstream locations of five hydrokarst systems (HKS) during four seasons. Conductivity and nitrates were higher in the downstream springs than in the pre-karst waters, whereas the concentration of organic matter, considered here as a pollution indicator, was lower. The microbial community composition varied largely between upstream and downstream locations, with multiple species of potentially pathogenic bacteria decreasing in the HKS. Bacteria indicative of pollution decreased as well when passing through the HKS, but potential biodegraders increased. This suggests that the HKS can filter out part of the polluting organic matter and, with it, part of the associated microorganisms. Nevertheless, the water quality, including the presence of pathogens in downstream springs, must be further monitored to control whether the water is appropriate for consumption. In parallel, the human populations located upstream must be advised of the risks resulting from their daily activities, improper stocking of their various wastes and dumping of their refuse in surface streams.

We examined the potential for natural attenuation of ten hydrokarst systems (HKS) in three mountain units in the Carpathian Mountains. We sampled in places where water enters below ground and where water emerges back to the surface in springs and is used as drinking water by the local communities. Water samples were used to assess the degree of chemical and microbiological pollution. Although the water in the ten HKS was rather clean, a general decrease in the concentration of most chemical compounds was observed along the flow path, regardless of the number of tributaries the underground stream receives. Dilution caused by tributaries could not account for the decrease in the concentration of most compounds. The contribution of other chemical immobilization processes, such as retention of pollution in the subsurface or sorption to sediment particles was suggested, in combination with the activity of microorganisms. The bacteria diversity is complex and decreases from upstream to downstream locations due to dilution with water provided by tributaries or retention of bacteria in the subsurface by adhesion to substrates. We suggest that karst can have a significant potential for natural attenuation by retaining the pollution underground, in combination with biodegradation performed by microorganisms.