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There are numerous sources of chemical pollutants which can impact the mangrove ecosystem through adjacent waters, industrial and sewage discharges and air depositions. Polycyclic aromatic hydrocarbons (PAHs) are semi volatile ubiquitous anthropogenic pollutants detected in all environmental compartments. In the monitoring framework for the mangrove ecosystem along the Red Sea coast of Saudi Arabia, nine mangrove stands were examined for the accumulation of PAHs. Polycyclic aromatic hydrocarbons were measured using Gas Chromatography-Mass Spectrometry (GC-MS). The mean values detected for total PAHs in sediments, roots and leaf were 2.98, 8.57 and 23.43 ng/g respectively. The trend of the total PAHs concentration in all sites showed the descending order: leaf > roots > sediments. Beside the sandy nature of the sediments, the presences of all stands in remote areas fare from the direct anthropogenic effects lead to these relative low values. PAH bio-concentration factors for leaf are two to three magnitudes higher than that in roots, suggesting atmosphere deposition /leaf uptake mechanism in addition to the sediment/root mechanism. The diagnostic ratios revealed that the sources of PAHs are mainly pyrogenic.