a b s t r a c tThe influence of climate variability on the diversity and distribution patterns of zooplankton communities was investigated in the Mondego estuary (Portugal) during four consecutive years characterized by highly variable precipitation and, consequently, river flow regime. Monthly samples were collected along the estuarine gradient at five sampling stations. Seasonal, inter-annual and spatial distributions were evaluated by multivariate analyses and three diversity indices were applied (Species number, Shannon Diversity and Average Taxonomic Distinctness). A two-year drought period presented significant differences in salinity values, especially in 2005 (extreme drought event). During the study period, copepoda was the main dominant group and Acartia tonsa the most abundant species, with the exception of autumn 2006, where high abundances of the cladoceran Penilia avirostris were noticed. Multivariate analysis indicated that zooplankton communities changed from a pre-to a post-drought period indicating the influence of hydrological parameters in communities' structure. The dry period was associated with an increase in zooplankton density, a reduction in seasonality and higher abundance and prevalence of marine species throughout the year. Seasonally, winter/spring communities were distinct from those in summer/autumn. Spatially, salinity-associated differences between upstream and downstream communities were reduced during the drought years, but during the post-drought year, these differences were detected again.

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Echiichthys vipera and Liza ramada were more abundant in autumn/winter. Temperature, 36 chlorophyll a and river flow were the main variation drivers observed although extreme drought 37 events (year 2005) seemed not to affect ichthyoplankton community structure. Main changes were 38 related to a spatial displacement of salinity gradient along the estuarine system which produced 39 changes in marine species distribution. 40 41