Gaining insight into molecular recognition at the molecular level, in particular, during nucleation of crystallites, is challenging and calls for studying well-defined model systems. Investigated by means of submolecular resolution scanning tunneling microscopy and theoretical molecular modeling, we report chiral recognition phenomena in the 2D crystallization of the helical chiral aromatic hydrocarbon pentahelicene on a Cu(111) surface. Homochiral, van der Waals bonded dimers constitute building blocks for self-assembly but form heterochiral as well as homochiral long-range-ordered structures. 2D racemate crystals, built up by homochiral dimers of both enantiomers, are observed at coverages close to a full monolayer. As soon as the coverage leads to second-layer nucleation, the dense racemate phase in the first layer disappears and a homochiral dimer conglomerate phase of lower 2D density appears. Our results show that, at the onset of second-layer nucleation, a local change of enantiomeric composition in the first layer occurs, causing the transition from a 2D racemate to a 2D conglomerate.

Ullmann coupling of chiral 2-bromo[4]helicene has been performed on a Cu(100) surface. Only homochiral 2,2'-bis[4]helicene as the product is observed using STM. Such stereoselectivity is based on the fact that the surface will favour a configuration with the central part of the molecule on the surface, causing the outer ends to spiral away from the surface.

The dehydrogenation of bisheptahelicene leads to specific products and induces desorption of the side-product bromine as hydrogen bromide.

The comparison of the self-assembly 9,9′-bisheptahelicene on the Au(111) surface, studied with scanning tunneling microscopy, with the self-assembly of the same species obtained by on-surface synthesis via Ullmann coupling from 9-bromoheptahelicene reveals a diastereomeric excess for the (M,P)-meso-form of 50%. The stereoselectivity is explained by a topochemical effect, in which the surface-alignment of the starting material and the organometallic intermediate sterically favor the (M,P)-transition state over the homochiral transition states.

Functionalization of surfaces with derivatives of Buckminsterfullerene fragment molecules seems a promising approach towards bottom up fabrication of carbon nanotube modified electrode surfaces. The modification of a Cu(100) surface with molecules of the buckybowl pentaindenocorannulene has been studied by means of scanning tunneling microscopy, carbon monoxide-modified non-contact atomic force microscopy, time-of-flight secondary mass spectrometry and quantum chemical calculations. Two different adsorbate modes are identified, in which the majority is oriented such that the bowl cavity points away from the surface and the convex side is partially immersed into a fouratom vacancy in the Cu(100) surface. A minority is oriented such that the convex side points away from the surface with the five benzo tabs oriented basically parallel to the surface. Thermal annealing leads to hydrogenation and planarization of the molecules in two steps under specific C-C bond cleavage. The benzo tabs of the convex side up species serve as hydrogen source. The final product has an open shell electron structure that is quenched on the surface.