Our application of the cost-based clustering algorithm provides an accurate and scalable method of detecting and predicting protein complexes within a PPI network.
The work of Berezinskii, Kosterlitz and Thouless in the 1970s revealed exotic phases of matter governed by the topological properties of low-dimensional materials such as thin films of superfluids and superconductors. A hallmark of this phenomenon is the appearance and interaction of vortices and antivortices in an angular degree of freedom-typified by the classical XY model-owing to thermal fluctuations. In the two-dimensional Ising model this angular degree of freedom is absent in the classical case, but with the addition of a transverse field it can emerge from the interplay between frustration and quantum fluctuations. Consequently, a Kosterlitz-Thouless phase transition has been predicted in the quantum system-the two-dimensional transverse-field Ising model-by theory and simulation. Here we demonstrate a large-scale quantum simulation of this phenomenon in a network of 1,800 in situ programmable superconducting niobium flux qubits whose pairwise couplings are arranged in a fully frustrated square-octagonal lattice. Essential to the critical behaviour, we observe the emergence of a complex order parameter with continuous rotational symmetry, and the onset of quasi-long-range order as the system approaches a critical temperature. We describe and use a simple approach to statistical estimation with an annealing-based quantum processor that performs Monte Carlo sampling in a chain of reverse quantum annealing protocols. Observations are consistent with classical simulations across a range of Hamiltonian parameters. We anticipate that our approach of using a quantum processor as a programmable magnetic lattice will find widespread use in the simulation and development of exotic materials.
The current generation of D-Wave quantum annealing processor is designed to minimize the energy of an Ising spin configuration whose pairwise interactions lie on the edges of a Chimera graph C M,N,L . In order to solve an Ising spin problem with arbitrary pairwise interaction structure, the corresponding graph must be minor-embedded into a Chimera graph. We define a combinatorial class of native clique minors in Chimera graphs with vertex images of uniform, near minimal size, and provide a polynomial-time algorithm that finds a maximum native clique minor in a given induced subgraph of a Chimera graph. These minors allow improvement over recent work and have immediate practical applications in the field of quantum annealing.
A recent Google study [Phys. Rev. X, 6:031015 (2016)] compared a D-Wave 2X quantum processing unit (QPU) to two classical Monte Carlo algorithms: simulated annealing (SA) and quantum Monte Carlo (QMC). The study showed the D-Wave 2X to be up to 100 million times faster than the classical algorithms. The Google inputs are designed to demonstrate the value of collective multiqubit tunneling, a resource that is available to D-Wave QPUs but not to simulated annealing. But the computational hardness in these inputs is highly localized in gadgets, with only a small amount of complexity coming from global interactions, meaning that the relevance to real-world problems is limited.In this study we provide a new synthetic problem class that addresses the limitations of the Google inputs while retaining their strengths. We use simple clusters instead of more complex gadgets and more emphasis is placed on creating computational hardness through frustrated global interactions like those seen in interesting real-world inputs. The logical spin-glass backbones used to generate these inputs are planar Ising models without fields and the problems can therefore be solved in polynomial time [J. Phys. A, 15:10 (1982)]. However, for general heuristic algorithms that are unaware of the planted problem class, the frustration creates meaningful difficulty in a controlled environment ideal for study.We use these inputs to evaluate the new 2000-qubit D-Wave QPU. We include the HFS algorithm-the best performer in a broader analysis of Google inputs-and we include state-ofthe-art GPU implementations of SA and QMC. The D-Wave QPU solidly outperforms the software solvers: when we consider pure annealing time (computation time), the D-Wave QPU reaches ground states up to 2600 times faster than the competition. In the task of zero-temperature Boltzmann sampling from challenging multimodal inputs, the D-Wave QPU holds a similar advantage and does not see significant performance degradation due to quantum sampling bias. CONTENTS
scite is a Brooklyn-based organization that helps researchers better discover and understand research articles through Smart Citations–citations that display the context of the citation and describe whether the article provides supporting or contrasting evidence. scite is used by students and researchers from around the world and is funded in part by the National Science Foundation and the National Institute on Drug Abuse of the National Institutes of Health.
customersupport@researchsolutions.com
10624 S. Eastern Ave., Ste. A-614
Henderson, NV 89052, USA
This site is protected by reCAPTCHA and the Google Privacy Policy and Terms of Service apply.
Copyright © 2024 scite LLC. All rights reserved.
Made with 💙 for researchers
Part of the Research Solutions Family.