Do young and old protein molecules have the same probability to be degraded? We addressed this question using metabolic pulse-chase labeling and quantitative mass spectrometry to obtain degradation profiles for thousands of proteins. We find that over 10% of proteins are degraded non-exponentially. Specifically, proteins are less stable in the first few hours of their life and stabilize with age. Degradation profiles are conserved and similar in two cell types.Many non-exponentially degraded (NED) proteins are subunits of complexes that are produced in super-stoichiometric amounts relative to their exponentially degraded (ED) counterparts.Within complexes, NED proteins have larger interaction interfaces and assemble earlier than ED subunits. Amplifying genes encoding NED proteins increases their initial degradation.Consistently, decay profiles can predict protein level attenuation in aneuploid cells. Together, our data show that non-exponential degradation is common, conserved and has important consequences for complex formation and regulation of protein abundance.3
We prove a useful identity valid for all ADE minimal S-matrices, that clarifies the transformation of the relative thermodynamic Bethe Ansatz (TBA) from its standard form into the universal one proposed by Al.B.Zamolodchikov.By considering the graph encoding of the system of functional equations for the exponentials of the pseudoenergies, we show that any such system having the same form as those for the ADE TBA's, can be encoded on A, D, E, A/Z 2 only. This includes, besides the known ADE diagonal scattering, the set of all SU (2) related magnonic TBA's. We explore this class sistematically and find some interesting new massive and massless RG flows. The generalization to classes related to higher rank algebras is briefly presented and an intriguing relation with level-rank duality is signalled. *
The translation of genetic information according to the sequence of the mRNA template occurs with high accuracy and fidelity. Critical events in each single step of translation are selection of transfer RNA (tRNA), codon reading and tRNA-regeneration for a new cycle. We developed a model that accurately describes the dynamics of single elongation steps, thus providing a systematic insight into the sensitivity of the mRNA translation rate to dynamic environmental conditions. Alterations in the concentration of the aminoacylated tRNA can transiently stall the ribosomes during translation which results, as suggested by the model, in two outcomes: either stress-induced change in the tRNA availability triggers the premature termination of the translation and ribosomal dissociation, or extensive demand for one tRNA species results in a competition between frameshift to an aberrant open-reading frame and ribosomal drop-off. Using the bacterial Escherichia coli system, we experimentally draw parallels between these two possible mechanisms.
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