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A soil micromorphological study was performed to demonstrate the impact of soil organisms on soil pore structure. Two examples are shown here. First, the influence of earthworms, enchytraeids and moles on the pore structure of a Greyic Phaeozem is demonstrated by comparing two soil samples taken from the same depth of the soil profile that either were affected or not affected by these organisms. The detected image porosity of the organism-affected soil sample was 5 times larger then the porosity of the not-affected sample. The second example shows macropores created by roots and soil microorganisms in a Haplic Luvisol and subsequently affected by clay coatings. Their presence was reflected in the soil water retention curve, which displayed multiple S-shaped features as obtained from the water balance carried out for the multi-step outflow experiment. The dual permeability models implemented in HYDRUS-1D was applied to obtain parameters characterizing multimodal soil hydraulic properties using the numerical inversion of the multi-step outflow experiment.