Covering: 2012 to 2017 This article reviews recent reports on the structural revision of natural products. Through a critical assessment of the original and revised published structures, the article addresses why each structure was targeted for revision, discusses the techniques and key discrepancies that led to the proposal of the revised structure, and offers measures that may have been taken during the original structure determination to prevent error. With the revised structures in hand, weaknesses of original proposals are assessed, providing a better understanding on the logic behind structure determination.
A new cyclic peptide, kakeromamide B (1), and previously described cytotoxic cyanobacterial natural products ulongamide A (2), lyngbyabellin A (3), 18E-lyngbyaloside C (4), and lyngbyaloside (5) were identified from an antimalarial extract of the Fijian marine cyanobacterium Moorea producens. Compound 1 exhibited moderate activity against Plasmodium falciparum blood-stages with an EC50 value of 8.9 µM whereas 2 and 3 were more potent with EC50 values of 0.99 µM and 1.5 nM, respectively. Compounds 1, 4, and 5 displayed moderate liver-stage antimalarial activity against P. berghei liver schizonts with EC50 values of 11, 7.1, and 4.5 µM, respectively. The threading-based computational method FINDSITEcomb2.0 predicted the binding of 1 and 2 to potentially druggable proteins of Plasmodium falciparum, prompting formulation of hypotheses about possible mechanisms of action. Kakeromamide B (1) was predicted to bind to several Plasmodium actin-like proteins and a sortilin protein suggesting possible interference with parasite invasion of host cells. When 1 was tested in a mammalian actin polymerization assay, it stimulated actin polymerization in a dose-dependent manner, suggesting that 1 does, in fact, interact with actin.
Two sulfated diterpene glycosides
featuring a highly substituted
and sterically encumbered cyclopropane ring have been isolated from
the marine red alga Peyssonnelia sp.
Combination of a wide array of 2D NMR spectroscopic experiments, in
a systematic structure elucidation workflow, revealed that peyssonnosides
A–B (1–2) represent a new class of diterpene
glycosides with a tetracyclo [7.5.0.01,10.05,9] tetradecane architecture. A salient feature of this workflow is
the unique application of quantitative interproton distances obtained
from the rotating frame Overhauser effect spectroscopy (ROESY) NMR
experiment, wherein the β-d-glucose moiety of 1 was used as an internal probe to unequivocally determine
the absolute configuration, which was also supported by optical rotatory
dispersion (ORD). Peyssonnoside A (1) exhibited promising
activity against liver stage Plasmodium berghei and moderate antimethicillin-resistant Staphylococcus
aureus (MRSA) activity, with no cytotoxicity against
human keratinocytes. Additionally, 1 showed strong growth
inhibition of the marine fungus Dendryphiella salina indicating an antifungal ecological role in its natural environment.
The high natural abundance and novel carbon skeleton of 1 suggests a rare terpene cyclase machinery, exemplifying the chemical
diversity in this phylogenetically distinct marine red alga.
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