Oyster reefs are one of the most threatened marine habitats on earth, with habitat loss resulting from water quality degradation, coastal development, destructive fishing practices, overfishing, and storm impacts. For successful and sustainable oyster reef restoration efforts, it is necessary to choose sites that support long-term growth and survival of oysters. Selection of suitable sites is critically important as it can greatly influence mortality factors and may largely determine the ultimate success of the restoration project. The application of Geographic Information Systems (GIS) provides an effective methodology for identifying suitable sites for oyster reef restoration and removes much of the uncertainty involved in the sometimes trial and error selection process. This approach also provides an objective and quantitative tool for planning future oyster reef restoration efforts. The aim of this study was to develop a restoration suitability index model and reef quality index model to characterize locations based on their potential for successful reef restoration within the Mission-Aransas Estuary, Texas, USA. The restoration suitability index model focuses on salinity, temperature, turbidity, dissolved oxygen, and depth, while the reef quality index model focuses on abundance of live oysters, dead shell, and spat. Size-specific Perkinsus marinus infection levels were mapped to illustrate general disease trends. This application was effective in identifying suitable sites for oyster reef restoration, is flexible in its use, and provides a mechanism for considering alternative approaches. The end product is a practical decision-support tool that can be used by coastal resource managers to improve oyster restoration efforts. As oyster reef restoration activities continue at small and large-scales, site selection criteria are critical for assisting stakeholders and managers and for maximizing long-term sustainability of oyster resources.

Suspended sediment dynamics of Corpus Christi Bay, Texas, USA, a shallow-water wind-driven estuary, were investigated by combining field and satellite measurements of total suspended solids (TSS). An algorithm was developed to transform 500-m Moderate Resolution Imaging Spectroradiometer (MODIS) Aqua satellite reflectance data into estimated TSS values. The algorithm was developed using a reflectance ratio regression of MODIS Band 1 (red) and Band 3 (green) with TSS measurements (n = 54) collected by the Texas Commission on Environmental Quality for Corpus Christi Bay and other Texas estuaries. The algorithm was validated by independently collected TSS measurements during the period of 2011-2014 with an uncertainty estimate of 13%. The algorithm was applied to the period of 2002-2014 to create a synoptic time series of TSS for Corpus Christi Bay. Potential drivers of long-term variability in suspended sediment were investigated. Median and IQR composites of suspended sediments were generated for seasonal wind regimes. From this analysis it was determined that long-term, spatial patterns of suspended sediment in the estuary are related to wind-wave resuspension during the predominant northerly and prevalent southeasterly seasonal wind regimes. The impact of dredging is also apparent in long-term patterns of Corpus Christi Bay as concentrations of suspended sediments over dredge spoil disposal sites are higher and more variable than surrounding areas, which is most likely due to their less consolidated sediments and shallower depths requiring less wave energy for sediment resuspension. This study highlights the advantage of how long-synoptic time series of TSS can be used to elucidate the major drivers of suspended sediments in estuaries.

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Mechanisms that generate subseasonal (1-2 months) events of sea level rise along the western Gulf Coast are investigated using the data collected by a dense tide gauge network: Texas Coastal Ocean Observation Network (TCOON) and National Water Level Observation Network (NWLON), satellite altimetry, and high-resolution (0.08°) ocean reanalysis product. In particular, the role of Loop Current and eddy shedding in generating the extreme sea level rise along the coast is emphasized. The time series of sea level anomalies along the western portion of the Gulf Coast derived from the TCOON and NWLON tide gauge data indicate that a subseasonal sea level rise which exceeds 15 cm is observed once in every 2-5 years. Based on the analysis of satellite altimetry data and high-resolution ocean reanalysis product, it is found that most of such extreme subseasonal events are originated from the anti-cyclonic (warm-core) eddy separated from the Loop Current which propagates westward. A prominent sea level rise is generated when the eddy reaches the western Gulf Coast, which occurs about 6-8 months after the formation of strong anti-cyclonic eddy in the central Gulf of Mexico. The results demonstrate that the accurate prediction of subseasonal sea level rise events along the Gulf Coast with the lead time of several months require a full description of large-scale ocean dynamical processes in the entire Gulf of Mexico including the characteristics of eddies separated from the Loop Current.