Comparative studies of developmental processes suggest that novel traits usually evolve through the cooption of preexisting genes and proteins, mainly via gene duplication and functional specialization of paralogs. However, an alternative hypothesis is that novel protein function can evolve without gene duplication, through changes in the spatiotemporal patterns of gene expression (e.g., via cis-regulatory elements), or functional modifications (e.g., addition of functional domains) of the proteins they encode, or both. Here we present an astacin metalloprotease, dubbed patristacin, which has been coopted without duplication, via alteration in the expression of a preexisting gene from the kidney and liver of bony fishes, for a novel role in the brood pouch of pregnant male pipefish. We examined the molecular evolution of patristacin and found conservation of astacin-specific motifs but also several positively selected amino acids that may represent functional modifications for male pregnancy. Overall, our results pinpoint a clear case in which gene cooption occurred without gene duplication during the genesis of an evolutionarily significant novel structure, the male brood pouch. These findings contribute to a growing understanding of morphological innovation, a critically important but poorly understood process in evolutionary biology.novel trait evolution ͉ patristacin ͉ Syngnathidae E volutionary innovation has been defined as ''the origin of a novel body part which may serve a novel function or specialize in a function that was already performed in the ancestral lineage but without a dedicated organ' ' (ref. 1, p. 581). In seahorses and pipefishes (family Syngnathidae) males carry their embryos on their ventral surface, either exposed to the environment or enclosed in a fleshy brood pouch (Fig. 1). The brood pouch is a clear example of an evolutionary innovation: syngnathids are the only lineage to have evolved a morphological structure that allows males to become pregnant. In many species of syngnathid fishes, the brood pouch is a complex organ composed of highly vascularized epithelial tissue that forms a honeycomb matrix encapsulating individual eggs during gestation ( Fig. 1) (2). This placenta-like tissue apparently supplies nutrients to developing embryos (3) in a manner analogous to the placenta of female mammals. The pouch is lined with cells rich in mitochondria (CRMs) (Fig. 1) (2, 4) that transfer ions between the brood pouch fluid and the male bloodstream, maintaining an osmotically neutral environment during the early stages of gestation (4-6). A phylogeny of the Syngnathidae suggests two independent origins of the brood pouch based on its location on either the abdomen (Gastrophori) or the tail (Urophori) of the male (7), and within these two lineages there is considerable variation in the degree to which the pouch encloses developing embryos, the complexity of the ''pseudoplacenta,'' and the structure of brood pouch folds (7).Clearly, the evolution of a structure as complex as a brood pouch req...

Mitochondrial DNA sequence data were used to examine the phylogeographic history of Steller's sea lions (Eumetopias jubatus) in relation to the presence of Plio‐Pleistocene insular refugia. Cytochrome b and control region sequences from 336 Steller's sea lions reveal phylogenetic lineages associated with continental refugia south of the ice sheets in North America and Eurasia. Phylogenetic analysis suggests the genetic structure of E. jubatus is the result of Pleistocene glacial geology, which caused the elimination and subsequent reappearance of suitable rookery habitat during glacial and interglacial periods. The cyclic nature of geological change produced a series of independent population expansions, contractions and isolations that had analogous results on Steller's sea lions and other marine and terrestrial species. Our data show evidence of four glacial refugia in which populations of Steller's sea lions diverged. These events occurred from approximately 60 000 to 180 000 years BP and thus preceded the last glacial maximum.

Background: The dusky dolphin (Lagenorhynchus obscurus) is distributed along temperate, coastal regions of New Zealand, South Africa, Argentina, and Peru where it feeds on schooling anchovy, sardines, and other small fishes and squid tightly associated with temperate ocean sea surface temperatures. Previous studies have suggested that the dusky dolphin dispersed in the Southern Hemisphere eastward from Peru via a linear, temperate dispersal corridor provided by the circumpolar west-wind drift. With new mitochondrial and nuclear DNA sequence data, we propose an alternative phylogeographic history for the dusky dolphin that was structured by paleoceanographic conditions that repeatedly altered the distribution of its temperate prey species during the Plio-Pleistocene.

Evolutionary studies have revealed that reproductive proteins in animals and plants often evolve more rapidly than the genome-wide average. The causes of this pattern, which may include relaxed purifying selection, sexual selection, sexual conflict, pathogen resistance, reinforcement, or gene duplication, remain elusive. Investigative expansions to additional taxa and reproductive tissues have the potential to shed new light on this unresolved problem. Here, we embark on such an expansion, in a comparison of the brood-pouch transcriptome between two male-pregnant species of the pipefish genus Syngnathus. Male brooding tissues in syngnathid fishes represent a novel, nonurogenital reproductive trait, heretofore mostly uncharacterized from a molecular perspective. We leveraged next-generation sequencing (Roche 454 pyrosequencing) to compare transcript abundance in the male brooding tissues of pregnant with nonpregnant samples from Gulf (S. scovelli) and dusky (S. floridae) pipefish. A core set of protein-coding genes, including multiple members of astacin metalloprotease and c-type lectin gene families, is consistent between species in both the direction and magnitude of expression bias. As predicted, coding DNA sequence analysis of these putative “male pregnancy proteins” suggests rapid evolution relative to nondifferentially expressed genes and reflects signatures of adaptation similar in magnitude to those reported from Drosophila male accessory gland proteins. Although the precise drivers of male pregnancy protein divergence remain unknown, we argue that the male pregnancy transcriptome in syngnathid fishes, a clade diverse with respect to brooding morphology and mating system, represents a unique and promising object of study for understanding the perplexing evolutionary nature of reproductive molecules.

Bottlenose dolphins (Tursiops truncatus) are consistently observed in the Marlborough Sounds, New Zealand. However, prior to the present study, no research has previously focused on this species within these waters, despite the potential for human impacts. Photo-identification undertaken during boat-based surveys conducted between 2003 and 2005 were used to assess occurrence, abundance, and movement patterns of bottlenose dolphins in the Marlborough Sounds. Longterm site fidelity was evident, with the majority of individuals resighted over multiple years. Lagged identification rates showed consistency over a 4-y period, with some individuals remaining for longer periods, while others frequently interchanged between different areas of the Marlborough Sounds. Migration rates were high, with approximately 25% leaving and entering the 890 km² region annually. Bottlenose dolphins in the Marlborough Sounds appear to form part of a larger, open, coastal population consisting of 385 individuals, with 211 (95% CI = 195 to 232) dolphins utilizing the region per annum. While their occurrence within these waters is frequent, the Marlborough Sounds appear to be only a section of a much larger home range for this bottlenose dolphin population.