This study investigated the intensity, trend and spatio-temporal variability of meteorological drought in the Lakes’ Region of Ethiopian Rift Valley using monthly rainfall and maximum and minimum temperature records for the period 1986–2019. Reconnaissance Drought Index (RDI) was employed to generate the intensity of drought at 3 and 12-months timescale. Mann-Kendall trend test was used to determine the trend of the changes in the RDI time series. The spatial extent of droughts has been interpolated by inverse distance weighted (IDW) method using the spatial analyst tool of ArcGIS. Results indicated the occurrence of different intensity and trend signals across seasons and over space in the study area. A total of 33 extreme drought months were observed in all stations during summer with varying intensity (− 2.01 at Halaba to − 3.52 at Wolaita) and 168 extreme drought months at annual timescale ranging from − 2.10 at Hawassa to − 4.51 at Wolaita. The intensity of drought events observed in Wolaita in 1986 at all timescales (RDI value of − 3.19, − 3.52 and − 4.51 for spring, summer and annual respectively) were very extraordinary and devastating. Drought magnitude showed increasing signal at 6 out of 10 stations, although statistically significant at only two stations (Arsi Negelle at all timescale and Butajira at spring and annual timescale). However, the spatial patterns of drought events didn’t exhibit clear pattern rather more localized distribution and variability. The frequency of drought incidence became intense in the study area from 2008 onwards at all timescales compared to the 1990s and 2000s.The increasing tendency of drought in recent years might be the manifestation of borderless global warming. The empirical evidences showed that drought events and their negative effects are highly localized in the study area and provide useful information for local-scale planning for drought management and response.

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