An extracellular nuclease gene of Bacillus subtilis was cloned in the same organism by detecting the amplified enzyme activity, which was secreted from the transformant cells on an RNA-containing agar medium. An open reading frame encoding 289 amino acids was identified within the cloned fragment. The transcriptional initiation site was determined by nuclease S1 mapping and the promoter region showed similarity to the conserved recognition sequences for the EaA andjor Ea" RNA polymerases. The production of the nuclease by the B. subtilis transformants greatly depends on the liquid medium used. SDSIPAGE analysis of the purified enzyme showed two adjoining bands of molecular mass about 32 kDa. and the NH2-terminal amino acid sequence analysis suggested that the NH2-terminal portion of the nuclease was subjected to a limited proteolysis after or during secretion. The nuclease was uniquely characterized as a Mg'+-activated ribonuclease which hydrolyzes RNA apparently nonspecifically into oligonucleotides with 5'-terminal phosphate. The deduced amino acid sequence of this enzyme shows no obvious similarity with other nuclease sequences. To characterize the extracellular nuclease system of B. suhtilis both enzymatically and genetically, we attempted to clone genes coding for the nuclease. As we noted that the wild-type B. subtilis cell forms a very small but distinct clear zone on RNA-containing nuclease assay plates, we attempted to shot gun clone the nuclease gene(s) by means of the overproduction of the enzyme due to the gene dosage effect.
The genusCorrespondence to A. Nakamura, Department of Biotechnology, Faculty of Agriculture, The University of Tokyo, Ydyoi 1-1-1, Bunkyo-ku, Tokyo 113, JapanAbbreviations. Bsn and bsn, Bacillus subtilis nuclease cloned in this study, and its gene, respectively; Cm, chloramphenicol.Enzvmes. Alkaline phosphatase (EC 3.1.3.1); deoxyribonuclease I (EC 3.1.21.1); nuclease S1 (EC 3.1.30.1); Escherichia coli DNA polymerase I (EC 2.7.7.7); nuclease PI (EC 3.1.30.1); ribonuclease Bsn from Barillus subtilis (EC 3.1.-.-); ribonuclease A from bovine pancreas (EC 3.1.27.5); ribonuclease Tz (EC 3.1.27.1); Thermus aquaticus DNA polymerase (EC 2.7.7.7); type-I1 restriction endonucleases BamHI, DraI, EcoRI, EcoRV, HindIII, NaeI, PstI, RsuI, Sun, SmaT and SspI (EC 3.1.21.4); T4 DNA kinase (EC 2.7.1.78); '14 DNA ligase (EC 6.5.1.1).Nofe. The nucleotide sequence data published here will appear in the DDBJ, EMBL and GenBank Nucleotide Sequence Databases under the accession number D01097.In this paper, we describe the cloning and sequencing of the gene coding for an extracellular nuclease (Bsn) from B. subtilis, together with its unique enzymatic properties.
MATERIALS AND METHODS
Bacterial strains and plasmids