The presence of dyes in aquatic environments can have harmful effects on aquatic life, including inhibiting photosynthesis, decreasing dissolved oxygen levels, and altering the behavior and reproductive patterns of aquatic organisms. In the initial phase of this review study, our aim was to examine the categories and properties of dyes as well as the impact of their toxicity on aquatic environments. Azo, phthalocyanine, and xanthene are among the most frequently utilized dyes, almost 70–80% of used dyes, in industrial processes and have been identified as some of the most commonly occurring dyes in water bodies. Apart from that, the toxicity effects of dyes on aquatic ecosystems were discussed. Toxicity testing relies heavily on two key measures: the LC50 (half-lethal concentration) and EC50 (half-maximal effective concentration). In a recent study, microalgae exposed to Congo Red displayed a minimum EC50 of 4.8 mg/L, while fish exposed to Disperse Yellow 7 exhibited a minimum LC50 of 0.01 mg/L. Anaerobic membrane bioreactors (AnMBRs) are a promising method for removing dyes from water bodies. In the second stage of the study, the effectiveness of different AnMBRs in removing dyes was evaluated. Hybrid AnMBRs and AnMBRs with innovative designs have shown the capacity to eliminate dyes completely, reaching up to 100%. Proteobacteria, Firmicutes, and Bacteroidetes were found to be the dominant bacterial phyla in AnMBRs applied for dye treatment. However, fouling has been identified as a significant drawback of AnMBRs, and innovative designs and techniques are required to address this issue in the future.

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