Ciprofloxacin, one of the most active new quinolone antimicrobial agents, is bactericidal against a broad spectrum of gram-positive and gram-negative microorganisms, including Pseudomonas aeruginosa. Although P. aeruginosa is intrinsically less susceptible to most antibiotics than other clinically significant gram-negative organisms, 90% of P. aeruginosa strains are inhibited by ciprofloxacin at 0.5 ,ug/ml (7).There have been reports of decreased susceptibility to ciprofloxacin during therapy in clinical studies of P. aeruginosa infections (9, 10, 27, 35). These reports did not specify whether the decrease in susceptibility was due to the selection of naturally occurring resistant strains or the mutation of the original strain to a resistant variant.Kaatz and Seo (24), however, have described a P. aeruginosa strain whose identity was based on serotype, pyocin type, and plasmid profile. The MIC of ciprofloxacin for this strain increased from 0.57 to 5.42 ,ug/ml during parenteral therapy, with no significant change in susceptibility to other antibiotics. Resistance involved a decrease in the sensitivity of DNA synthesis to inhibition by ciprofloxacin, but the basis of this decreased sensitivity was not investigated further. Ogle et al. (31) analyzed 25 pairs of pre-and posttherapy isolates of P. aeruginosa from patients treated with imipenem, norfloxacin, or ciprofloxacin. Southern hybridization showed clonal identity between 23 of the 25 paired isolates, confirming the development of quinolone resistance rather than superinfection in these strains. The mechanism of this acquired resistance was not studied.Quinolones interfere with the activity of DNA gyrase (12,39), an essential bacterial topoisomerase that converts relaxed DNA to the supercoiled form. DNA gyrase has been isolated from a variety of bacteria (3,11,26,40) including P. aeruginosa (28). In vitro studies with P. aeruginosa PAO have shown that alterations in DNA gyrase (gyrA cfxA nalA mutations) or permeability (cfxB nfxB) can result in de-* Corresponding author. creased susceptibility to quinolones, including ciprofloxacin (32), norfloxacin (20), and nalidixic acid (22).To further understand the factors which mediate quinolone susceptibility in P. aeruginosa, we studied three clinical isolates of P. aeruginosa from a patient with a complicated infection. The MIC of ciprofloxacin increased from 0.5 ,ug/ml at the initiation of parenteral ciprofloxacin therapy to 16 ,ug/ml during therapy. All isolates were verified as the same strain by Southern hybridization with a strainspecific P. aeruginosa DNA probe (John Ogle, University of Colorado School of Medicine, Denver). To characterize the mechanisms involved in the acquisition of resistance to ciprofloxacin in vivo, we examined the outer membrane proteins (OMPs), lipopolysaccharide (LPS) content, antimicrobial susceptibilities, accumulation of ciprofloxacin, and DNA gyrase of these isolates. We provide evidence that the acquired resistance to quinolones in this clinical strain is primarily due to an altera...