With an increasing number of biomacromolecular crystal structures being measured to ultra-high resolution, it has become possible to extend to large systems experimental charge-density methods that are usually applied to small molecules. A library has been built of average multipole populations describing the electron density of chemical groups in all 20 amino acids found in proteins. The library uses the Hansen & Coppens multipolar pseudo-atom model to derive molecular electron density and electrostatic potential distributions. The library values are obtained from several small peptide or amino acid crystal structures refined against ultra-high-resolution X-ray diffraction data. The library transfer is applied automatically in the MoPro software suite to peptide and protein structures measured at atomic resolution. The transferred multipolar parameters are kept fixed while the positional and thermal parameters are refined. This enables a proper deconvolution of thermal motion and valence-electron-density redistributions, even when the diffraction data do not extend to subatomic resolution. The use of the experimental library multipolar atom model (ELMAM) also has a major impact on crystallographic structure modelling in the case of small-molecule crystals at atomic resolution. Compared to a spherical-atom model, the library transfer results in a more accurate crystal structure, notably in terms of thermal displacement parameters and bond distances involving H atoms. Upon transfer, crystallographic statistics of fit are improved, particularly free R factors, and residual electron-density maps are cleaner.
Chemical
bonding in the triclinic phase of 1,3,5-triamino-2,4,6-trinitrobenzene
(TATB) has been analyzed based on the experimental electron density
derived from X-ray diffraction data obtained at 20 K. The results
have been compared with those from solid state theoretical calculations.
The total electron density has been analyzed in terms of the Quantum
Theory of Atoms in Molecules (QTAIM). Features of the covalent bonds
demonstrate the presence of multiple bonds of various order. Strong
intramolecular hydrogen bonds and weaker intermolecular bonds within
the layer structure are characterized by the properties of their (3,
−1) critical points. Weaker interactions, predominantly O···O,
between the layers have additionally been characterized. Integrated
atomic charges are also reported. The importance of correcting the
primary X-ray data for λ/2 contamination is discussed.
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