Identifying and quantifying nitrogen pools is essential for understanding the nitrogen cycle in aquatic ecosystems. The ubiquitous diatoms represent an overlooked nitrate pool as they can accumulate nitrate intracellularly and utilize it for nitrogen assimilation, dissipation of excess photosynthetic energy, and Dissimilatory Nitrate Reduction to Ammonium (DNRA). Here, we document the global co-occurrence of diatoms and intracellular nitrate in phototrophic microbial communities in freshwater (n = 69), coastal (n = 44), and open marine (n = 4) habitats. Diatom abundance and total intracellular nitrate contents in water columns, sediments, microbial mats, and epilithic biofilms were highly significantly correlated. In contrast, diatom community composition had only a marginal influence on total intracellular nitrate contents. Nitrate concentrations inside diatom cells exceeded ambient nitrate concentrations ∼100–4000-fold. The collective intracellular nitrate pool of the diatom community accounted for <1% of total nitrate in pelagic habitats and 65–95% in benthic habitats. Accordingly, nitrate-storing diatoms are emerging as significant contributors to benthic nitrogen cycling, in particular through Dissimilatory Nitrate Reduction to Ammonium activity under anoxic conditions.
Copepod carcasses are prevalent in marine ecosystems and might represent an important component of the sinking flux of particulate organic carbon in the ocean. The extent to which copepod carcasses contribute to the biological carbon pump is controlled by different environmental factors, including temperature. However, the effect of temperature on the longer-term kinetics of carbon mineralization of copepod carcasses is not well-studied. We conducted laboratory experiments to quantify the carbon mineralization associated with sinking carcasses of the cosmopolitan copepod Acartia tonsa through aerobic microbial respiration at 5 temperatures (20, 16, 12, 8, and 4°C). Microbial respiration rates associated with the carcasses were positively correlated with temperature and characterized by an initial short lag-phase, a rapid increase to a maximum rate, and a subsequent gradual decline in the rate of degradation. On average, 50% of the total carbon of the carcasses was mineralized within 6-12 d at 20°C, versus >60 d at 4°C. During the incubations, most carbon mineralization occurred in the ambient seawater, likely fueled by dissolved organic carbon leaking from the carcasses into the surrounding seawater. Extrapolating measured carbon turnover and sinking rates suggests that at 20°C, the mineralization of sinking copepod carcasses is constrained to the surface ocean. In contrast, at 4°C, sinking copepod carcasses can reach the deep ocean before they have been completely degraded. Hence, in low-temperature regions, copepod carcasses may represent an important agent for carbon export through the biological carbon pump.
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