DNA replication in eukaryotes initiates at many origins distributed across each chromosome. Origins are bound by the origin recognition complex (ORC), which, with Cdc6 and Cdt1, recruits and loads the Mcm2-7 (MCM) helicase as an inactive double hexamer during G1 phase. The replisome assembles at the activated helicase in S phase. Although the outline of replisome assembly is understood, little is known about the dynamics of individual proteins on DNA and how these contribute to proper complex formation. Here we show, using single-molecule optical trapping and confocal microscopy, that yeast ORC is a mobile protein that diffuses rapidly along DNA. Origin recognition halts this search process. Recruitment of MCM molecules in an ORC- and Cdc6-dependent fashion results in slow-moving ORC-MCM intermediates and MCMs that rapidly scan the DNA. Following ATP hydrolysis, salt-stable loading of MCM single and double hexamers was seen, both of which exhibit salt-dependent mobility. Our results demonstrate that effective helicase loading relies on an interplay between protein diffusion and origin recognition, and suggest that MCM is stably loaded onto DNA in multiple forms.
Optical trapping of (sub)micron-sized
particles is broadly employed
in nanoscience and engineering. The materials commonly employed for
these particles, however, have physical properties that limit the
transfer of linear or angular momentum (or both). This reduces the
magnitude of forces and torques, and the spatiotemporal resolution,
achievable in linear and angular traps. Here, we overcome these limitations
through the use of single-crystal rutile TiO2, which has
an exceptionally large optical birefringence, a high index of refraction,
good chemical stability, and is amenable to geometric control at the
nanoscale. We show that rutile TiO2 nanocylinders form
powerful joint force and torque transducers in aqueous environments
by using only moderate laser powers to apply nN·nm torques at
kHz rotational frequencies to tightly trapped particles. In doing
so, we demonstrate how rutile TiO2 nanocylinders outperform
other materials and offer unprecedented opportunities to expand the
control of optical force and torque at the nanoscale.
Titanium dioxide (TiO2) is a key component of diverse optical and electronic applications that exploit its exceptional material properties. In particular, the use of TiO2 in its single-crystalline phase can offer substantial advantages over its amorphous and polycrystalline phases for existing and yet-to-be-developed applications. However, the implementation of single-crystal TiO2 has been hampered by challenges in its fabrication and subsequent surface functionalization. Here, we introduce a novel top-down approach that allows for batch fabrication of uniform high-aspect-ratio single-crystal TiO2 nanostructures with targeted sidewall profiles. We complement our fabrication approach with a functionalization strategy that achieves dense, uniform, and area-selective coating with a variety of biomolecules. This allows us to fabricate single-crystal rutile TiO2 nanocylinders tethered with individual DNA molecules for use as force- and torque-transducers in an optical torque wrench. These developments provide the means for increased exploitation of the superior material properties of single-crystal TiO2 at the nanoscale.
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