BackgroundThe Symbiodinium community associated with scleractinian corals is widely considered to be shaped by seawater temperature, as the coral's upper temperature tolerance is largely contingent on the Symbiodinium types harboured. Few studies have challenged this paradigm as knowledge of other environmental drivers on the distribution of Symbiodinium is limited. Here, we examine the influence of a range of environmental variables on the distribution of Symbiodinium associated with Acropora millepora collected from 47 coral reefs spanning 1,400 km on the Great Barrier Reef (GBR), Australia.Methodology/Principal FindingsThe environmental data included Moderate Resolution Imaging Spectroradiometer (MODIS) satellite data at 1 km spatial resolution from which a number of sea surface temperature (SST) and water quality metrics were derived. In addition, the carbonate and mud composition of sediments were incorporated into the analysis along with in situ water quality samples for a subset of locations. Analyses were conducted at three spatio-temporal scales [GBR (regional-scale), Whitsunday Islands (local-scale) and Keppel Islands/Trunk Reef (temporal)] to examine the effects of scale on the distribution patterns. While SST metrics were important drivers of the distribution of Symbiodinium types at regional and temporal scales, our results demonstrate that spatial variability in water quality correlates significantly with Symbiodinium distribution at local scales. Background levels of Symbiodinium types were greatest at turbid inshore locations of the Whitsunday Islands where SST predictors were not as important. This was not the case at regional scales where combinations of mud and carbonate sediment content coupled with SST anomalies and mean summer SST explained 51.3% of the variation in dominant Symbiodinium communities.Conclusions/SignificanceReef corals may respond to global-scale stressors such as climate change through changes in their resident symbiont communities, however, management of local-scale stressors such as altered water quality is also necessary for maintenance of coral-Symbiodinium associations.

High coral cover and topographic complexity are favorable qualities of a healthy coral reef. Because coral reef restoration is expensive and coral growth is naturally slow, there is a need to strategically arrange coral transplants to maximize coral cover and topographic complexity. Similarly, it is important to understand how differences in the life history characteristics of coral transplants can influence changes in the structural attributes of coral reefs. This study utilizes agent-based computer modeling to explore the different spatial scenarios of coral transplantation using corals with contrasting r-and K-selected life histories. Spatial indexes are used to compare coral cover and topographic complexity at incremental time scales, within which disturbance events are of minor importance in spatial structuring. The outcomes of the model suggest that even-spaced grided transplanting arrangements provide the fastest increase in coral cover and three-dimensional habitat space (topographic complexity) across large temporal scales (<30 years) for corals with r-selected life history strategies.

ABSTRACT1. Aerial photograph classification was used to map perennial thick canopy seagrass presence/ absence over a large area (85 km 2 ) off the coast of Western Australia. Within those areas mapped as seagrass, a geostatistical nonparametric interpolation method was applied to map the probability of seagrass species presence from underwater tow video. Multiple species mixtures were mapped at fixed probability thresholds of 0.95, 0.75, 0.50, and 0.25. Taxa included Amphibolis spp., Posidonia coriacea, P. sinuosa, P. australis and ephemeral species (Halophila and Zostera tasmanica (newly named as Heterozostera polychlamys)).2. The most commonly occurring species were respectively Amphibolis spp., Posidonia coriacea, P. sinuosa, P. australis, and the ephemeral species. Amphibolis, P. coriacea, and the ephemeral species were mapped predominantly as mixed assemblages (71-89% mixed), whereas P. sinuosa and P. australis were typically mapped as single species.3. Different species growth habits led to distinctive differences in large area distributions. All species were highly variable over short distances (5500 m), and spatial dependence persisted over more than 5 km. However, Posidonia sinuosa meadows were oriented with the longest axis running north-south, and a shorter axis running east-west perpendicular to the coastline (spatial dependence to 2.8 km and 0.8 km, respectively). The ephemeral species were less successfully mapped, largely owing to the potentially different growth patterns of the grouped species, and because their full extent could not be captured by the aerial photograph classification.4. The individual biology of each species results in unique landscape features where Posidonia sinuosa forms larger continuous and predominantly monospecific meadows, whereas the more common Amphibolis and P. coriacea form multi-species patchy meadows. These mapped features suggest that the emergence of species patterns in seagrass landscapes is influenced by differences in clonal growth among seagrass species.5. Probabilistic species mapping provided information unavailable from discretely classified maps, and facilitates targeted sampling for improving map accuracy, and for more realistically evaluating *Correspondence to: K.W. Holmes, School of Earth and Geographical Sciences, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia. E-mail: kholmes@segs.uwa.edu.au species and mixed species distribution predictions. The kriging approach, although not well suited for all types of vegetation data, performed well for clonal seagrasses.

BackgroundLipids in reef building corals can be divided into two classes; non-polar storage lipids, e.g. wax esters and triglycerides, and polar structural lipids, e.g. phospholipids and cholesterol. Differences among algal endosymbiont types are known to have important influences on processes including growth and the photobiology of scleractinian corals yet very little is known about the role of symbiont types on lipid energy reserves.Methodology/Principal FindingsThe ratio of storage lipid and structural lipid fractions of Scott Reef corals were determined by thin layer chromatography. The lipid fraction ratio varied with depth and depended on symbiont type harboured by two corals (Seriatopora hystrix and Pachyseris speciosa). S. hystrix colonies associated with Symbiodinium C1 or C1/C# at deep depths (>23 m) had lower lipid fraction ratios (i.e. approximately equal parts of storage and structural lipids) than those with Symbiodinium D1 in shallow depths (<23 m), which had higher lipid fraction ratios (i.e. approximately double amounts of storage relative to structural lipid). Further, there was a non-linear relationship between the lipid fraction ratio and depth for S. hystrix with a modal peak at ∼23 m coinciding with the same depth as the shift from clade D to C types. In contrast, the proportional relationship between the lipid fraction ratio and depth for P. speciosa, which exhibited high specificity for Symbiodinium C3 like across the depth gradient, was indicative of greater amounts of storage lipids contained in the deep colonies.Conclusions/SignificanceThis study has demonstrated that Symbiodinium exert significant controls over the quality of coral energy reserves over a large-scale depth gradient. We conclude that the competitive advantages and metabolic costs that arise from flexible associations with divergent symbiont types are offset by energetic trade-offs for the coral host.