Phylogenetic relationships of the pantropical and polyphyletic family Icacinaceae were investigated, focusing on the Old World vining genera. Plastid ndhF, rbcL and matK sequences from taxa representing 32 of the 36 currently recognized genera were analysed with maximum parsimony and Bayesian methods. As in previous studies, our results show that the family is divided into several poorly resolved groups. An evaluation of the traditional tribal classification revealed Iodeae as polyphyletic and the monogeneric Sarcostigmateae as sister to a monophyletic Phytocreneae (with the inclusion of Rhyticaryum). In Iodeae, the monospecific, eastern Malesian Polyporandra was embedded in the Old World Iodes. A strongly supported clade containing Phytocreneae plus Rhyticaryum was present in the Icacina group. The tropical African genera Chlamydocarya and Polycephalium were embedded in the Old World Pyrenacantha. Further relationships in the family and potential synapomorphic characters of the clades are discussed. New combinations are made for Polyporandra and Chlamydocarya/Polycephalium spp., which are formally synonymized with Iodes and Pyrenacantha, respectively. Conclusions about family‐level relationships (and circumscription) cannot be reached with these data because of several weakly supported inter‐relationships between some clades, such as Cassinopsis, Platea/Calatola and the Emmotum group. © 2014 The Linnean Society of London, Botanical Journal of the Linnean Society, 2014, 176, 277–294.
In Arabidopsis thaliana , four FAD-dependent lysine-specific histone demethylases (LDL1, LDL2, LDL3, and FLD) are present, bearing both a SWIRM and an amine oxidase domain. In this study, a comparative analysis of gene structure, evolutionary relationships, tissue- and organ-specific expression patterns, physiological roles and target genes for the four Arabidopsis LDL/FLDs is reported. Phylogenetic analysis evidences a different evolutionary history for the four LDL/FLDs , while promoter activity data show that LDL/FLDs are strongly expressed during plant development and embryogenesis, with some gene-specific expression patterns. Furthermore, phenotypical analysis of loss-of-function mutants indicates a role of all four Arabidopsis LDL/FLD genes in the control of flowering time, though for some of them with opposing effects. This study contributes toward a better understanding of the LDL/FLD physiological roles and may provide biotechnological strategies for crop improvement.
Syzygium Gaertn. is the largest woody genus of flowering plants in the world. Unpublished but extensive recent herbarium surveys suggest 1200‒1800 species distributed throughout the Old World tropics and subtropics (Table 1). Until recently, Syzygium exemplified a recurring taxonomic impediment among megadiverse genera, wherein few taxonomists worked on the group in any sustained manner, a majority of the herbarium specimens remained undetermined or misidentified, few if any attempts were made to look at the genus globally, and limited or no molecular studies were available to provide a predictive phylogenetic context of the genus. The situation with Syzygium has slowly begun to change as allied genera have been absorbed into the genus (Biffin et al., 2006; Craven & Biffin, 2010), and predictive phylogenetically-based infrageneric classifications are emerging. Taxonomic outputs on Syzygium also have been increasing across its range with the description of new species, resolution of nomenclatural and typification issues, and some regional revisions being initiated or updated. However, virtually all regional treatments (which some areas lack) need urgent revision because they are severely outdated, have limited molecular sampling and are error-ridden. We are coordinating a genus-wide taxonomic update of Syzygium through a series of 22 regional revisions, including 9 in the Flora Malesiana region (Figure 1). Each treatment will include a phylogenetic framework with species descriptions, type information, synonymy, distributions, ecological notes, and keys. Field images (Figure 2) and/or line drawings will be included with the goal of every species being illustrated. This working group has been formed to encourage a coordinated effort to document this unwieldy taxonomic giant and regional botanists working on the group are encouraged to be involved. A robust taxonomy of the genus is a prerequisite for testing the many complex questions about evolution and ecology that Syzygium could help address.
Syzygium Gaertn. is the largest woody genus of flowering plants in the world. Unpublished but extensive recent herbarium surveys suggest 1200‒1800 species distributed throughout the Old World tropics and subtropics (Table 1). Until recently, Syzygium exemplified a recurring taxonomic impediment among megadiverse genera, wherein few taxonomists worked on the group in any sustained manner, a majority of the herbarium specimens remained undetermined or misidentified, few if any attempts were made to look at the genus globally, and limited or no molecular studies were available to provide a predictive phylogenetic context of the genus. The situation with Syzygium has slowly begun to change as allied genera have been absorbed into the genus (Biffin et al., 2006; Craven & Biffin, 2010), and predictive phylogenetically-based infrageneric classifications are emerging. Taxonomic outputs on Syzygium also have been increasing across its range with the description of new species, resolution of nomenclatural and typification issues, and some regional revisions being initiated or updated. However, virtually all regional treatments (which some areas lack) need urgent revision because they are severely outdated, have limited molecular sampling and are error-ridden. We are coordinating a genus-wide taxonomic update of Syzygium through a series of 22 regional revisions, including 9 in the Flora Malesiana region (Figure 1). Each treatment will include a phylogenetic framework with species descriptions, type information, synonymy, distributions, ecological notes, and keys. Field images (Figure 2) and/or line drawings will be included with the goal of every species being illustrated. This working group has been formed to encourage a coordinated effort to document this unwieldy taxonomic giant and regional botanists working on the group are encouraged to be involved. A robust taxonomy of the genus is a prerequisite for testing the many complex questions about evolution and ecology that Syzygium could help address.
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