In cells, proteins are embedded in
a crowded environment that controls
their properties via manifold avenues including weak protein–macromolecule
interactions. A molecular level understanding of these quinary interactions
and their contribution to protein stability, function, and localization
in the cell is central to modern structural biology. Using a mutational
analysis to quantify the energetic contributions of single amino acids
to the stability of the ALS related protein superoxide dismutase I
(SOD1) in mammalian cells, we show that quinary interactions destabilize
SOD1 by a similar energetic offset for most of the mutants, but there
are notable exceptions: Mutants that alter its surface properties
can even lead to a stabilization of the protein in the cell as compared
to the test tube. In conclusion, quinary interactions can amplify
and even reverse the mutational response of proteins, being a key
aspect in pathogenic protein misfolding and aggregation.
Water is more than an inert spectator during liquid−liquid phase separation (LLPS), the reversible compartmentalization of protein solutions into a protein-rich and a dilute phase. We show that LLPS is driven by changes in hydration entropy and enthalpy. Tuning LLPS by adjusting experimental parameters, e.g., addition of co-solutes, is a major goal for biological and medical applications. This requires a general model to quantify thermodynamic driving forces. Here, we develop such a model based on the measured amplitudes of characteristic THz-features of two hydration populations: "Cavity-wrap" water hydrating hydrophobic patches is released during LLPS leading to an increase in entropy. "Bound" water hydrating hydrophilic patches is retained since it is enthalpically favorable. We introduce a THzphase diagram mapping these spectroscopic/thermodynamic changes. This provides not only a precise understanding of hydrophobic and hydrophilic hydration driving forces as a function of temperature and concentration but also a rational means to tune LLPS.
A new Rococo 2 X-ray fluorescence detector was implemented into the cryogenic sample environment at the Hard X-ray Micro/Nano-Probe beamline P06 at PETRA III, DESY, Hamburg, Germany. It features a high solid angle of up to 1.10 steradian and high count rates of 1 Mcounts s−1 per sensor.
THz absorption spectroscopy reveals that water is a critical factor that governs the transient complex formation of redox proteins. Binding of the substrate creates an entropically favorable complex with bulk-like solvent dynamics.
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