No abstract

Pack-ice seals are key indicator species in the Southern Ocean. Their large size (2–4 m) and continent-wide distribution make them ideal candidates for monitoring programs via very-high-resolution satellite imagery. The sheer volume of imagery required, however, hampers our ability to rely on manual annotation alone. Here, we present SealNet 2.0, a fully automated approach to seal detection that couples a sea ice segmentation model to find potential seal habitats with an ensemble of semantic segmentation convolutional neural network models for seal detection. Our best ensemble attains 0.806 precision and 0.640 recall on an out-of-sample test dataset, surpassing two trained human observers. Built upon the original SealNet, it outperforms its predecessor by using annotation datasets focused on sea ice only, a comprehensive hyperparameter study leveraging substantial high-performance computing resources, and post-processing through regression head outputs and segmentation head logits at predicted seal locations. Even with a simplified version of our ensemble model, using AI predictions as a guide dramatically boosted the precision and recall of two human experts, showing potential as a training device for novice seal annotators. Like human observers, the performance of our automated approach deteriorates with terrain ruggedness, highlighting the need for statistical treatment to draw global population estimates from AI output.

Ecological sciences are using imagery from a variety of sources to monitor and survey populations and ecosystems. Very High Resolution (VHR) satellite imagery provide an effective dataset for large scale surveys. Convolutional Neural Networks have successfully been employed to analyze such imagery and detect large animals. As the datasets increase in volume, O(TB), and number of images, O(1k), utilizing High Performance Computing (HPC) resources becomes necessary. In this paper, we investigate a task-parallel data-driven workflows design to support imagery analysis pipelines with heterogeneous tasks on HPC. We analyze the capabilities of each design when processing a dataset of 3,000 VHR satellite images for a total of 4 TB. We experimentally model the execution time of the tasks of the image processing pipeline. We perform experiments to characterize the resource utilization, total time to completion, and overheads of each design. Based on the model, overhead and utilization analysis, we show which design approach to is best suited in scientific pipelines with similar characteristics.

Fine-scale sea ice conditions are key to our efforts to understand and model climate change. We propose the first deep learning pipeline to extract fine-scale sea ice layers from high-resolution satellite imagery (Worldview-3). Extracting sea ice from imagery is often challenging due to the potentially complex texture from older ice floes (i.e., floating chunks of sea ice) and surrounding slush ice, making ice floes less distinctive from the surrounding water. We propose a pipeline using a U-Net variant with a Resnet encoder to retrieve ice floe pixel masks from very-high-resolution multispectral satellite imagery. Even with a modest-sized hand-labeled training set and the most basic hyperparameter choices, our CNN-based approach attains an out-of-sample F1 score of 0.698–a nearly 60% improvement when compared to a watershed segmentation baseline. We then supplement our training set with a much larger sample of images weak-labeled by a watershed segmentation algorithm. To ensure watershed derived pack-ice masks were a good representation of the underlying images, we created a synthetic version for each weak-labeled image, where areas outside the mask are replaced by open water scenery. Adding our synthetic image dataset, obtained at minimal effort when compared with hand-labeling, further improves the out-of-sample F1 score to 0.734. Finally, we use an ensemble of four test metrics and evaluated after mosaicing outputs for entire scenes to mimic production setting during model selection, reaching an out-of-sample F1 score of 0.753. Our fully-automated pipeline is capable of detecting, monitoring, and segmenting ice floes at a very fine level of detail, and provides a roadmap for other use-cases where partial results can be obtained with threshold-based methods but a context-robust segmentation pipeline is desired.