Background: Protein fragments of the gap junction Cx43 regulate cellular functions, including resistance to hypoxic stress. Results: Hypoxia-sensitive IRES activity within the coding region of Cx43 is responsible for generating carboxyl-terminal domains. Conclusion: Endogenous fragments of Cx43 seem to convey important non-junctional functions. Significance: Learning how fragments of gap junction proteins are generated is crucial for understanding their functions.

No abstract

In the past decade, major developments in instrumentation and methodology have been achieved in proteomics. For proteome investigations of complex biological samples derived from cell cultures, tissues, or whole organisms, several techniques are state of the art. Especially, many improvements have been undertaken to quantify differences in protein expression between samples from, e.g., treated vs. untreated cells and healthy vs. control patients. In this review, we give a brief insight into the main techniques, including gel-based protein separation techniques, and the growing field of mass spectrometry.

In an effort to gain deeper insight into the molecular processes underlying neurodegeneration in Parkinson's disease, we performed gene expression profiling at several early time points after MPTP-injection into old (1-year) mice. We used a PCR-based gene expression profiling method, digital expression pattern display (DEPD), a method of very high sensitivity and reproducibility, which displays almost all transcripts of a tissue. To identify cell death-associated genes, we defined clusters of differentially expressed transcripts with expression behaviour that correlated with the temporal profile of cell death progression and characterized one of these cell death clusters further. We selected one of the strongest regulated genes, the serum and glucocorticoid-regulated kinase 1 (sgk1), and validated its differential expression by Northern blot analysis, semiquantitative PCR and in situ hybridization. Up-regulation of sgk1 (i) coincides with the onset of dopaminergic cell death in both the 8-week acute and 1-year subacute MPTP models, (ii) spans the entire brain, (iii) is attenuated by the l-deprenyl-mediated inhibition of the MPTP conversion to its active metabolite MPP+ and (iv) is not induced by dehydration. This study demonstrated that the combination of the DEPD technology, clustering analysis and a detailed histopathology is a useful tool for elucidating molecular pathways in neurodegenerative diseases.

To gain more insight into the development of human teeth, we characterized different compartments of impacted third molars at two developmental stages by assessing expression levels of a set of genes. We considered genes known to be essential for the development of teeth and ectomesenchyme as well as genes covering characteristic features of stemness. Molars were divided into the operculum, periodontal ligament, developing pulp and, using a new approach, the pad-like tissue beneath the developing pulp. Markers for ectomesenchyme and tooth development known from rodents were assayed by semiquantitative PCR and every compartment was assigned its own signature of gene expression. The expression of markers characteristic of stem cells pointed to multipotent features. The expression patterns found shift in the course of development underscoring the relevance of these genes involved in human tooth development. The results suggest an inherent asymmetry between the developing pulp and pad-like tissue established early in tooth development. A microarray analysis of cells derived from pad-like tissue and pulp proper was performed to obtain cues regarding the consequences of tissue diversification. Both sets of data support the validity of our new approach to the subdivision of the developing tooth, by indicating a compartment-dependent commitment of isolated cells probably due to the postulated asymmetry within the developing tooth germ.