Materials:Unless otherwise noted, all solvents and reagents were purchased from VWR or Sigma-Aldrich.The ruthenium-based metathesis catalyst was obtained from Materia Inc. and stored in a drybox prior to use, and the RuO4 SEM staining agent was obtained from Polysciences, Inc and stored at 4 ºC. The ruthenium metathesis catalyst ((H2IMes)(pyr)2(Cl)2RuCHPh) and PLA macromonomer initiator (N-(hydroxyethanyl)-cis-5-norbornene-exo-2,3-dicarboximide) were prepared as described previously (1). Dry solvents were purified by passing them through solvent purification columns, and 3,6-dimethyl-1,4-dioxane-2,5-dione was purified by sublimation under vacuum. All other solvents and chemicals were used without further purification unless otherwise noted.
General Information:NMR spectra were recorded at room temperature on a Varian Inova 500 (at 500 MHz), and analyzed on MestReNova software. Gel permeation chromatography (GPC) was carried out in THF on two Plgel 10 μm mixed-B LS columns (Polymer Laboratories) connected in series with a miniDAWN TREOS multiangle laser light scattering (MALLS) detector, a ViscoStar viscometer and Optilab rex differential refractometer (all from Wyatt Technology). The dn/dc values used for the polylactide and polystyrene macromonomers were 0.050 and 0.180 respectively, and dn/dc values for the brush polymers and random copolymers were obtained for each injection by assuming 100% mass elution from the columns. SEM images were taken on a ZEISS 1550 VP
We investigate the relationship between inherent secondary structure and aggregation propensity of peptides containing chameleon sequences (i.e., sequences that can adopt either α or β structure depending on context) using a combination of replica exchange molecular dynamics simulations, ion-mobility mass spectrometry, circular dichroism and transmission electron microscopy. We focus on an eight-residue long chameleon sequence that can adopt an α-helical structure in the context of the iron-binding protein from Bacillus anthracis (PDB id 1JIG) and a β-strand in the context of the baculovirus P35 protein (PDB id 1P35). We show that the isolated chameleon sequence is intrinsically disordered, interconverting between α-helical and β-rich conformations. The inherent conformational plasticity of the sequence can be constrained by addition of flanking residues with a given secondary structure propensity. Intriguingly, we show that the chameleon sequence with helical flanking residues aggregates rapidly into fibrils, whereas the chameleon sequence with flanking residues that favor β-conformations has weak aggregation propensity. This work sheds new insights into the possible role of α-helical intermediates in fibril formation.
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