A second-generation potential energy function for solid carbon and hydrocarbon molecules that is based on an empirical bond order formalism is presented. This potential allows for covalent bond breaking and forming with associated changes in atomic hybridization within a classical potential, producing a powerful method for modelling complex chemistry in large many-atom systems. This revised potential contains improved analytic functions and an extended database relative to an earlier version (Brenner D W 1990 Phys. Rev. B 42 9458). These lead to a significantly better description of bond energies, lengths, and force constants for hydrocarbon molecules, as well as elastic properties, interstitial defect energies, and surface energies for diamond.

The effect of filling nanotubes with C60, CH4, or Ne on the mechanical properties of the nanotubes is examined. The approach is classical molecular dynamics using the reactive empirical bond order (REBO) and the adaptive intermolecular REBO potentials. The simulations predict that the buckling force of filled nanotubes can be larger than that of empty nanotubes, and the magnitude of the increase depends on the density of the filling material. In addition, these simulations demonstrate that the buckling force of empty nanotubes depends on temperature. Filling the nanotube disrupts this temperature effect so that it is no longer present in some cases.

The experiments described here examine 25-100 eV CF 3 ϩ and C 3 F 5 ϩ ion modification of a polystyrene ͑PS͒ surface, as analyzed by x-ray photoelectron spectroscopy. The molecular dynamics computer simulations probe the structurally and chemically similar reactions of 20-100 eV CH 3 ϩ and C 3 H 5 ϩ with PS. CF 3 ϩ and C 3 F 5 ϩ each form a distribution of different fluorocarbon ͑FC͒ functional groups on PS in amounts dependent upon the incident ion energy, structure, and fluence. Both ions deposit mostly intact upon the surface at 25 eV, although they also undergo some crosslinking upon deposition. Fragmentation of the two ions increases as the ion energies are increased to 50 eV. Both ions show increases in total fluorine and fluorinated carbon content when changing the ion energy from 25 to 50 eV. The simulations predict that CH 3 ϩ and C 3 H 5 ϩ behave in a similar fashion to their FC analogs, remaining mostly intact and either embedding or scattering from the surface without reacting at 20 eV. At 50 and 100 eV, the simulations predict fragmentation most or all of the time. The simulations also show that the chemical products of the collisions depend significantly on the structure of the incident isomer. The simulations further illustrate how the maximum penetration depth of ion fragments depends on ionic structure, incident energy, and the identity of the penetrating fragment. These ion-surface results are discussed in terms of their possible role in plasmas.

The expansion of the second-generation reactive empirical bond order (REBO) potential for hydrocarbons, as parametrized by Brenner and co-workers, to include oxygen is presented. This involves the explicit inclusion of C-O, H-O, and O-O interactions to the existing C-C, C-H, and H-H interactions in the REBO potential. The details of the expansion, including all parameters, are given. The new, expanded potential is then applied to the study of the structure and chemical stability of several molecules and polymer chains, and to modelling chemical reactions among a series of molecules, within classical molecular dynamics simulations.

The modification of bundled single-walled and multiwalled carbon nanotubes is examined using a combination of computational and experimental methods. The computational approach is classical molecular dynamics simulations using the many-body reactive empirical bond-order potential parametrized by Brenner. The simulations consider the deposition of CH3 + at incident energies of 10, 45, and 80 eV. They predict the chemical functionalization of the nanotubes, the formation of defects on the nanotube walls, and the formation of cross-links between neighboring nanotubes or between the walls of a single nanotube. They also illustrate the manner in which the number of walls in the nanotube and incident energy affect the results. In the experiments, multiwalled nanotubes with about 40 shells (average diameter of 25 nm) are synthesized by chemical vapor deposition. CF3 + ions are deposited at incident energies of 10 and 45 eV, and then the nanotubes are examined with X-ray photoelectron spectroscopy and scanning electron microscopy. These experiments find strong evidence of chemical functionalization, in agreement with the simulation results.