The fine-scale behavioural activities of rainbow trout (Oncorhynchus mykiss) in nature are not well understood, but are of importance for identifying interactions with the ecosystem and of interest to conservationists and recreational anglers. We have undertaken a high-resolution acoustic telemetry study to identify the distinct movement patterns of 30 rainbow trout in a freshwater lake, specifically examining swim speed, area of movement, and site preference in both summer and winter. Activity levels were reduced in winter compared with summer across all fish, but ranking of individuals was consistent. In summer, 16/30 fish displayed diel movement, in which they travelled to a different area of the lake at dawn and returned at dusk, while other fish maintained their site preference regardless of the time of day or swam more randomly throughout the lake. These patterns were minimized in winter, where there was a reduction in cross-lake movement under ice and only 4/30 fish displayed diel movement. Winter conditions may limit the capability (physiological limitations) and (or) motivation (prey availability) for diel behaviours observed in summer.

The purpose of this manuscript is to consider interactions between transgenic (TG) plants and biogeochemical cycles, with an emphasis on how microorganisms involved in soil nutrient cycles may be influenced by transgenic plant gene products. We have also attempted to identify research areas considered a priority to fill existing information requirements on use of TG plants in the environment.

Underwater acoustic tag telemetry was used to assess behavioural differences between juvenile wild-type (i.e. non-transgenic, NT) and growth hormone (GH) transgenic (T) coho salmon Oncorhynchus kisutch in a contained simulated ocean environment. T O. kisutch were found across days to maintain higher baseline swimming speeds than NT O. kisutch and differences in response to feeding were detected between T and NT genotypes. This is the first study to assess behaviour of GH transgenic salmonids in a marine environment and has relevance for assessing whether behavioural effects of GH overexpression seen in freshwater environments can be extrapolated to oceanic phases of the life cycle.

Experiments examining potential impacts of growth hormone (GH) transgenesis in fish typically use a single source strain, and do not address potential differential impacts in strains of different genetic backgrounds. Here, we examine the effects of differing genetic backgrounds when reared in culture on the growth of transgenic and non-transgenic coho salmon (Oncorhynchus kisutch) produced by mating sires from different rivers with transgenic dams from a single origin. We found a significant difference in size between offspring of sires originating from various river systems in British Columbia. This difference was independent of differences between transgenotypes (i.e., transgenic vs. non-transgenic offspring). However, the effects of strain or sire were relatively small compared to the effects of the transgene, which were consistent regardless of sire origin. Thus, results derived from studies of GH transgenic fish from a single source population can provide useful information for assessments of GH transgenic salmon from other systems. This has important implications for examining potential risks from introgression of a transgene into different populations.

Doubled haploid gynogens are individuals whose genetic material consists of two identical maternal chromosome sets and who lack paternal genetic contributions. These individuals can be useful in whole‐genome sequence assembly to eliminate allelic variation in an individual that otherwise complicates the discrimination of SNPs and paralogs in regular diploids. This is particularly important in salmonid species, which have extensive remnants of an ancestral whole‐genome duplication. Further, doubled haploid individuals are fully homozygous and can be used to generate clonal lines. Here, successful timing was determined for late pressure shocking for producing doubled haploid gynogens in five Oncorhynchus species (Chinook Salmon O. tshawytscha, Coho Salmon O. kisutch, Chum Salmon O. keta, Pink Salmon O. gorbuscha, and Sockeye Salmon O. nerka) and one Salvelinus species (domesticated Artic Char Salvelinus alpinus). For this study, sperm was treated with UV irradiation to inactivate the paternal nuclear DNA and used to fertilize eggs. The resulting zygotes were pressure shocked at various times following fertilization to form doubled haploid embryos via inhibition of the first cell division (mitotic gynogenesis). At an incubation temperature of 10.5°C, successful postfertilization pressure shock times for maximal survival of confirmed gynogens were 2.41–2.83 accumulated thermal units (ATUs) for Coho Salmon, 2.63–2.84 ATUs for Chum Salmon, 2.84–3.06 ATUs for Pink Salmon, 2.19 ATUs for Sockeye Salmon, and 2.63–3.06 ATUs for Chinook Salmon, whereas for Arctic Char a shock time of 2.29–2.54 ATUs at 4°C incubation was successful. Survival to fry stage ranged from less than 1% to 11.7%. Survivors were genotyped using microsatellite markers to assess nonpaternity and maternal homozygosity and were found to be 92.5% gynogens when averaged across all treatments and species. Mitotic gynogenetic individuals were produced in all six salmonid species and were used in subsequent studies to generate whole‐genome sequences for Chinook, Coho, Chum, and Sockeye salmons.