Replication of the single-stranded DNA genome of geminiviruses occurs via a double-stranded intermediate that is subsequently used as a template for rolling-circle replication of the viral strand. transcription from promoters in the intergenic region (IR) (4) and rolling-circle replication (5-8). Apart from one single viral protein, geminivirus DNA multiplication entirely relies on the DNA-replication apparatus of the host plant, representing a simple system to study DNA replication in the plant nucleus. The origin of viral-strand DNA replication is located in the IR and has been mapped to the conserved nonanucleotide sequence TAATATTAC, flanked by inverted repeats potentially forming a stem-loop (9, 10).Only one viral protein is indispensable for replication (11). This replication protein (AL1, Cl, or ORFIII/IV protein) is encoded by either one or two open reading frames. In the latter case, the mRNA spanning the overlapping reading frames is spliced to give rise to a single polypeptide chain (12,13 (27) was cloned in pGEX-3X (29). Alternatively to the factor Xa cleavage site of pGEXC1, the amino acid sequence-PGSGSGDDDK-specifying an enterokinase cleavage site (30) was engineered between the glutathione S-transferase (GST) and the Rep domains. The following oligonucleotides, 5'-GT GGGATCCCGGGCTCCGGCTCCGGCGACGACG-ACGACAAAATGCCAAGATCAGGTCGTTT-3' and 5'-C-ACCCTCAATCACTATACTCACCGG-3', were used for PCR (31) on pGEXC1 DNA, yielding the expression vector pGEXEC1.Expression of Rep Protein in E. coli and Purification. A 1:10 dilution of E. coli DH5 a (pGEXC1 or pGEXEC1) in NZCY medium (29) containing 100 ,tg of ampicillin per ml was grown for 1 hr at 28°C, and protein expression was induced by 0. (Fig. 1A) were done with the GST-Rep fusion of pGEXC1; all other experiments were done with the GSTRep fusion protein expressed by pGEXEC1. Approximately 300 ng of GST-Rep protein were incubated with substrate DNA in a total volume of 20 ,ul for 30 min at 37°C in cleavage buffer (25 mM Tris-HCl, pH 7.5/75 mM NaCl/5 mM MgCl2/ 2.5 mM dithiothreitol/0.5 mM EDTA), containing 50 fmol of each oligonucleotide or 100 fmol of double-stranded BspEIBamHI IR fragment. The reaction was stopped by 2 ,ul of 0.5 M EDTA, lyophilized, resuspended in loading buffer [98% (vol/vol) formamide] and analyzed on 12% sequencing gels, which were dried and autoradiographed. The cleavage products were excised from the gels and quantified by liquid scintillation counting.Abbreviations: GST, glutathione S-transferase; IR, intergenic region; Rep protein, replication initiator protein; TYLCV, tomato yellow leaf curl virus. tTo whom reprint requests should be addressed.