Metabolite profiling in succinate semialdehyde dehydrogenase (SSADH; Aldh5a1 -/-) deficient mice previously revealed elevated c-hydroxybutyrate (GHB) and total GABA in urine and total brain and liver extracts. In this study, we extend our metabolic characterization of these mutant mice by documenting elevated GHB and total GABA in homogenates of mutant kidney, pancreas and heart. We quantified b-alanine (a GABA homolog and putative neurotransmitter) to address its potential role in pathophysiology. We found normal levels of b-alanine in urine and total homogenates of mutant brain, heart and pancreas, but elevated concentrations in mutant kidney and liver extracts. Amino acid analysis in mutant total brain homogenates revealed no abnormalities except for significantly decreased glutamine, which was normal in mutant liver and kidney extracts. Regional amino acid analysis (frontal cortex, parietal cortex, hippocampus and cerebellum) in mutant mice confirmed glutamine results. Glutamine synthetase protein and mRNA levels in homogenates of mutant mouse brain were normal. We profiled organic acid patterns in mutant brain homogenates to assess brain oxidative metabolism and found normal concentrations of Kreb's cycle intermediates but increased 4,5-dihydroxyhexanoic acid (a postulated derivative of succinic semialdehyde) levels. We conclude that SSADH-deficient mice represent a valid metabolic model of human SSADH deficiency, manifesting focal neurometabolic abnormalities which could provide key insights into pathophysiologic mechanisms. Keywords: b-alanine, 4,5-dihydroxyhexanoic acid, GABA, c-hydroxybutyrate, glutamine, succinate semialdehyde dehydrogenase. Succinic semialdehyde dehydrogenase (SSADH; succinatesemialdehyde:NAD + oxidoreductase, EC 1.2.1.24) deficiency (4-hydroxybutyric aciduria) is a rare autosomal recessively inherited defect of the GABA degradative pathway (Fig. 1) . Clinical findings in patients are heterogeneous, featuring psychomotor retardation, hypotonia, absence of developed speech, ataxia and occasionally seizures (Gibson et al. 1998). Current therapeutic intervention is limited to vigabatrin, an antiepileptic which acts pharmacologically through inhibition of GABA-transaminase ( Fig. 1) (Gibson et al. 1995(Gibson et al. , 1997. Unfortunately, vigabatrin Received November 19, 2001; revised manuscript received December 14, 2001; accepted December 19, 2001.Address correspondence and reprints requests to K. Michael Gibson, Biochemical Genetics Laboratory, Oregon Health & Science University, Genetics Laboratories, 2525 SW 3rd Avenue, Portland, OR 97201, USA. E-mail: gibsonm@ohsu.edu Abbreviations used: DHHA, 4,5-dihydroxyhexanoic acid; GHB, c-hydroxybutyrate or 4-hydroxybutyrate; GS, glutamine synthetase; SSADH, succinate semialdehyde dehydrogenase; tBA, total b-alanine, representing free and esterified b-alanine; TCA, tricarboxylic acid cycle; tGABA, total GABA, representing free and esterified GABA.