This article introduces the software program called EthoSeq, which is designed to extract probabilistic behavioral sequences (tree-generated sequences, or TGSs) from observational data and to prepare a TGS-species matrix for phylogenetic analysis. The program uses Graph Theory algorithms to automatically detect behavioral patterns within the observational sessions. It includes filtering tools to adjust the search procedure to user-specified statistical needs. Preliminary analyses of data sets, such as grooming sequences in birds and foraging tactics in spiders, uncover a large number of TGSs which together yield single phylogenetic trees. An example of the use of the program is our analysis of felid grooming sequences, in which we have obtained 1,386 felid grooming TGSs for seven species, resulting in a single phylogeny. These results show that behavior is definitely useful in phylogenetic analysis. EthoSeq simplifies and automates such analyses, uncovers much of the hidden patterns of long behavioral sequences, and prepares this data for further analysis with standard phylogenetic programs. We hope it will encourage many empirical studies on the evolution of behavior.

Farmers in the Paranapanema Valley (São Paulo, Brazil) have reported problems with flocks of Eared Doves (Zenaida auriculata) eating sprouting soybeans. In this region these birds breed colonially in sugar-cane, and eat four crop seeds, using 70% of the dry weight, in the following order of importance: maize, wheat, rice, and soybeans. Three weeds (Euphorbia heterophylla, Brachiaria plantaginea, and Commelina benghalensis) were important. This information suggests that the doves adapted particularly well to the landscape created by the agricultural practices in the region, exploiting many available foods.

In the present paper we focus on the study of complex behavioural systems, within an explicit phylogenetic framework. We reconstruct the phylogeny of rodents using grooming sequences from 12 terminals. Using a method derived from graph theory, we decompose complex behavioural systems into strings of behavioural units (behavioural routines) which are then used as behavioural characters to compose the phylogenetic matrix in addition to three mitochondrial markers as molecular characters (the cytochrome b gene (cytb), the 16S ribosomal RNA gene and the 12S ribosomal RNA gene). Our results point to a highly structured behavioural morphospace: only a few characters have been selected for, within the total space of possibilities. The optimization of hundreds of non-homoplastic routines onto three distinct phylogenies (behavioural, combined data and the molecular supertree of Fabre et al., 2012) reveals the same evolutionary trend from simple to complex: while simple behavioural routines (zero- or first-order sequences) are synapomorphies at basal levels of the phylogeny, progressively more complex behaviours evolve later, appearing closer to the tips of the phylogeny. Also, the optimization shows that the organisation of units into modules of coordinated action patterns first evolved around large body parts, namely the head and the trunk, modules that were later fused into one single organising module among rodents. We support the use of complex behavioural systems as a promising tool in the study of evolutionary scenarios and discuss the role of routines length and microstructure to provide phylogenetic information and elucidate evolutionary processes.

Recent studies on the impacts of forest fragmentation on understory insectivorous birds in the Neotropics have highlighted that even narrow linear clearings, such as roads, can affect the movements of this guild of birds. We used playback trials of territorial vocalizations to assess the movements of three understory insectivorous bird species across two unpaved roads bisecting Parque Estadual Carlos Botelho in southeast Brazil, located within one of the largest remaining continuous Atlantic Forests. Movement patterns varied among species. While Chamaeza campanisona never crossed these roads, Pyriglena leucoptera crossed them in almost 100 percent of tests. Although Conopophaga lineata exhibited a significantly lower number of crossings along cleared sites, it was eventually willing to traverse the roads, showing an intermediate pattern. Shaded areas with connected canopy did not improve birds' willingness to cross roads compared with areas where treecrowns were at least 3 m apart. Similarly, birds' willingness to cross an 8-m wide road with limited traffic (six vehicles/wk) was not significantly greater than that of a 12-m wide road with more intense traffic (41 vehicles/d). Our findings suggest that the negative impact of roads on bird movement is an issue that should be addressed by managers of Atlantic Forest conservation units, especially as economic development results in pressure to pave and widen roads.Foreign language abstract is available in the online version of this article.

To avoid certain problems encountered with more-traditional and invasive methods in behavioral-ecology studies of mammalian predators, such as felids, molecular approaches have been employed to identify feces found in the field. However, this method requires a complete molecular biology laboratory, and usually also requires very fresh fecal samples to avoid DNA degradation. Both conditions are normally absent in the field. To address these difficulties, identification based on morphological characters (length, color, banding, scales and medullar patterns) of hairs found in feces could be employed as an alternative. In this study we constructed a morphological identification key for guard hairs of eight Neotropical felids (jaguar, oncilla, Geoffroy’s cat, margay, ocelot, Pampas cat, puma and jaguarundi) and compared its efficiency to that of a molecular identification method, using the ATP6 region as a marker. For this molecular approach, we simulated some field conditions by postponing sample-conservation procedures. A blind test of the identification key obtained a nearly 70% overall success rate, which we considered equivalent to or better than the results of some molecular methods (probably due to DNA degradation) found in other studies. The jaguar, puma and jaguarundi could be unequivocally discriminated from any other Neotropical felid. On a scale ranging from inadequate to excellent, the key proved poor only for the margay, with only 30% of its hairs successfully identified using this key; and have intermediate success rates for the remaining species, the oncilla, Geoffroy’s cat, ocelot and Pampas cat, were intermediate. Complementary information about the known distributions of felid populations may be necessary to substantially improve the results obtained with the key. Our own molecular results were even better, since all blind-tested samples were correctly identified. Part of these identifications were made from samples kept in suboptimal conditions, with some samples remaining outdoors for up to seven days, simulating conditions in the field. It appears that both methods can be used, depending on the available laboratory facilities and on the expected results.