No abstract

Molecular weight measurements of several oligonucleotides ranging in size from 12 to 60 bases were performed by matrix-assisted laser desorption/ionization with a time-of-flight mass spectrometer (MALDI-TOF). In each case, the mass accuracy was better than 0.1%. Sequences for two 12-base oligonucleotides and a 24-base oligonucleotide were determined using calf spleen phosphodiesterase to sequentially cleave from the 5' end. A MALDI-TOF spectrum of the digest mixture shortly after the addition of the enzyme produced a characteristic oligonucleotide ladder. Molecular ions in the mass spectrum corresponded to the products of enzymatic cleavage, and the mass differences between these peaks identified the individual nucleotides. The resolution and mass accuracy of MALDI-TOF were sufficient to unambiguously identify the individual nucleotides in the 12- and 24-base strands.

Differences in charge state distributions of hairpin versus linear strands of oligonucleotides are analyzed using electrospray ionization mass spectrometry (ESI-MS) in the negative ion detection mode. It is observed that the linear structures show lower charge state distribution than the hairpin strands of the same composition. The concentration of ammonium acetate and the cone voltage are major factors that cause the shift of the negative ions in the charge states. The ESI data presented here are supported by UV spectra of strands acquired at 260 nm wavelength in aqueous ammonium acetate solution. We will show that the strands that demonstrate a higher charge state distribution in the gas phase also have a higher melting temperature in solution.

RATIONALE: Steroids can be injected to behave as therapeutic agents to promote muscle growth and strength. Areas of concern include synthetic steroids in consumer meat and milk products and the presence of anabolic steroids in athletes. Here we demonstrate a new ionization method for high sensitivity steroid analysis using liquid chromatography/mass spectrometry (LC/MS). METHODS: Solvent-assisted inlet ionization (SAII) mass spectrometry was coupled directly to an infusion pump or to a liquid chromatograph to determine the limits of detection and quantitation for selected steroids. LC/MS/MS data was acquired on a quadrupole time-of-flight (QTOF) mass spectrometer and high resolution-accurate mass LC/MS data was obtained on an Orbitrap mass spectrometer. RESULTS: The SAII limit of detection for infusion into the Orbitrap using high mass resolution and accurate mass was shown, for the steroids studied, to be low ppqt and the limit of quantitation using LC/MS was low ppt. Low ppb levels were detected with high signal-to-noise from spiked urine using a simple Ziptip procedure without sample concentration. CONCLUSIONS: LC/SAII-MS is more sensitive than electrospray ionization (ESI) at similar mobile phase flow rates for the analysis of steroids. Previous studies have shown LC/SAII-MS to have high sensitivity for analysis of peptides. The combined results suggests this easy to implement ionization method may advantageously replace ESI for a wide range of analyses. Copyright © 2012 John Wiley & Sons, Ltd.Steroids are hormones normally found in plants, animals, and fungi. [1][2][3][4][5] When not produced naturally, they can be injected to behave as therapeutic agents, for example, to promote muscle growth and strength. [1,2] Areas of concern include the abnormal amount of natural and synthetic steroids in consumer meat products and the presence of anabolic steroids in athletes. [1][2][3][4] Because of the inherent moral and health concerns associated with steroids, novel detection and quantitation methods are constantly being developed and improved.Mass spectrometry (MS) has been used extensively in steroid analyses. [3][4][5][6][7][8][9][10][11][12][13][14][15][16][17][18] Gas chromatography (GC)/MS is commonly used for analyzing steroids in biological matrices, such as tissue and urine, and in environmental samples, such as water and sediments. [5][6][7][8] However, for optimum GC analyses, time-consuming sample preparation procedures are necessary. For example, hydrolysis and/or derivatization are commonly performed to enhance volatility or ionization efficiency. [3,[6][7][8]11] Liquid chromatography (LC) coupled with MS and tandem mass spectrometry (MS/MS) allows faster sample analysis and reduces sources of error because less sample preparation is required than with GC/MS. [4,9,10] However, derivatization for LC/MS analyses has been used to increase the sensitivity of detection and to improve quantitation. [9][10][11] Electrospray ionization (ESI), commonly used with LC/MS, is often combined with solid-phase extrac...

Synthetic oligonucleotide strands ranging from 5 to 25 units in length are commonly used as standards, probes, and templates in various bioanalytical applications. Until recently, their preparation, storage, and handling were regarded as unimportant, but this work provides valuable information to the contrary. The systematic degradation of oligonucleotide strands during sample preparation is investigated by repeatedly freezing/thawing short strands followed by matrix-assisted laser desorption ionization mass spectrometric (MALDI-MS) analysis. It is shown here that the longevity of an oligonucleotide strand is dependent on several factors including base composition, solution concentrations, and strand length as well as thawing conditions. Several trends in strand robustness were established. Our studies reveal that the robustness of strands is base-dependent: T-mer > A-mer > C-mer > G-mer. Likewise, an increase in the length of the strands increases the tendency of a sample to degrade. Another observation included that samples of mixed bases degrade according to structural conformations. All of these observations are attributed to the fact that the samples undergo degradation during sample/solvent isolation during freezing.