Biometric systems (BS) helps in reorganization of individual person based on the biological traits like ears, veins, signatures, voices, typing styles, gaits, etc. As, the Uni-modal BS does not give better security and recognition accuracy, the multimodal BS is introduced. In this paper, biological characters like face, finger print and iris are used in the feature level fusion based multimodal BS to overcome those issues. The feature extraction is performed by Bi-directional Empirical Mode Decomposition (BEMD) and Grey Level Co-occurrence Matrix (GLCM) algorithm. Hilbert-Huang transform (HHT) is applied after feature extraction to obtain local features such as local amplitude and phase. The combination of BEMD, HHT and GLCM are used for achieving effective accuracy in the classification process. MMB-BEMD-HHT method is used in Multiclass support vector machine technique (MC-SVM) as a classifier. The false rejection ratio has improved using feature level fusion (FLF) and MC-SVM technique. The performance of MMB-BEMD-HHT method is measured based on the parameters like False Acceptance Ratio (FAR), False Rejection Ratio (FRR), and accuracy and compared it with an existing system. The MMB-BEMD-HHT method gave 96% of accuracy for identifying the biometric traits of individual persons.