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Medium length (500-200 bp) alternating purine-pyrimidine DNAs were prepared by sonication of synthetic polymers at low temperature. The products, and the hairpin structures derived from them after melting, were sufficiently small for high-resolution 31P NMR studies. Of the five sequences studied, two DNAs, poly(dG-dC).poly(dG-dC) and poly(dA-dU).poly(dA-dU), gave singlet 31P resonances, while three others, poly(dA-dT).poly(dA-dT), poly(dA-br5U).poly(dA-br5U), and poly(dI-dC).poly(dI-dC), exhibited two resolved signals of equal area. This indicates the existence of two distinct alternating phosphodiester backbone conformations for these latter three B-DNAs in solution. Controls of homopolymers, which were also prepared by sonication, showed only singlet 31P resonances. Of the alternating sequences DNAs, only sonicated poly(dG-dC).poly(dG-dC) exhibited a conformational transition to a high salt (greater than 2.5 M) form which exhibited two well-resolved 31P resonances of equal area. This indicates that the high salt form of poly(dG-dC).poly(dG-dC) also has an alternating backbone structure, and it is presumed to be a Z-DNA. These results indicate a general response of the DNA backbone conformation to alternating purine-pyrimidine base sequences but with a degree of sequence and environmental specificity which might have functional genetic significance.

The ground electronic state (X(1)A(1)) of hexafluoroacetylacetone (HFAA) has been subjected to synergistic experimental and theoretical investigations designed to resolve controversies surrounding the nature of intramolecular hydrogen bonding for the enol tautomer. Cryogenic (93K) X-ray diffraction studies were conducted on single HFAA crystals grown in situ by means of the zone-melting technique, with the resulting electron density maps affording clear evidence for distinguishable O(1)-H and H...O(2) bonds that span an interoxygen distance of 2.680 +/- 0.003 A. Such laboratory findings have been corroborated by a variety of quantum chemical methods including Hartree-Fock (HF), density functional [DFT (B3LYP)], Møller-Plesset perturbation (MPn), and coupled cluster [CCSD, CCSD(T)] treatments built upon extensive sets of correlation-consistent basis functions. Geometry optimizations performed at the CCSD(T)/aug-cc-pVDZ level of theory predict an asymmetric (C(s)) equilibrium configuration characterized by an O...O donor-acceptor separation of 2.628 A. Similar analyses of the transition state for proton transfer reveal a symmetric (C(2v)) structure that presents a potential barrier of 21.29 kJ/mol (1779.7 cm(-1)) height. The emerging computational description of HFAA is in reasonable accord with crystallographic measurements and suggests a weakening of hydrogen-bond strength relative to that of the analogous acetylacetone molecule.

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