This paper describes a rain‐event driven, process‐oriented simulation model, DNDC, for the evolution of nitrous oxide (N2O), carbon dioxide (CO2), and dinitrogen (N2) from agricultural soils. The model consists of three submodels: thermal‐hydraulic, decomposition, and denitrification. Basic climate data drive the model to produce dynamic soil temperature and moisture profiles and shifts of aerobic‐anaerobic conditions. Additional input data include soil texture and biochemical properties as well as agricultural practices. Between rainfall events the decomposition of organic matter and other oxidation reactions (including nitrification) dominate, and the levels of total organic carbon, soluble carbon, and nitrate change continuously. During rainfall events, denitrification dominates and produces N2O and N2. Daily emissions of N2O and N2 are computed during each rainfall event and cumulative emissions of the gases are determined by including nitrification N2O emissions as well. Sensitivity analyses reveal that rainfall patterns strongly influence N2O emissions from soils but that soluble carbon and nitrate can be limiting factors for N2O evolution during denitrification. During a year sensitivity simulation, variations in temperature, precipitation, organic C, clay content, and pH had significant effects on denitrification rates and N2O emissions. The responses of DNDC to changes of external parameters are consistent with field and experimental results reported in the literature.

Climate change threatens to release abundant carbon that is sequestered at high latitudes, but the constraints on microbial metabolisms that mediate the release of methane and carbon dioxide are poorly understood. The role of viruses, which are known to affect microbial dynamics, metabolism and biogeochemistry in the oceans, remains largely unexplored in soil. Here, we aimed to investigate how viruses influence microbial ecology and carbon metabolism in peatland soils along a permafrost thaw gradient in Sweden. We recovered 1,907 viral populations (genomes and large genome fragments) from 197 bulk soil and size-fractionated metagenomes, 58% of which were detected in metatranscriptomes and presumed to be active. In silico predictions linked 35% of the viruses to microbial host populations, highlighting likely viral predators of key carbon-cycling microorganisms, including methanogens and methanotrophs. Lineage-specific virus/host ratios varied, suggesting that viral infection dynamics may differentially impact microbial responses to a changing climate. Virus-encoded glycoside hydrolases, including an endomannanase with confirmed functional activity, indicated that viruses influence complex carbon degradation and that viral abundances were significant predictors of methane dynamics. These findings suggest that viruses may impact ecosystem function in climate-critical, terrestrial habitats and identify multiple potential viral contributions to soil carbon cycling.

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