Titration of microorganisms in infectious or environmental samples is a corner stone of quantitative microbiology. A simple method is presented to estimate the microbial counts obtained with the serial dilution technique for microorganisms that can grow on bacteriological media and develop into a colony. The number (concentration) of viable microbial organisms is estimated from a single dilution plate (assay) without a need for replicate plates. Our method selects the best agar plate with which to estimate the microbial counts, and takes into account the colony size and plate area that both contribute to the likelihood of miscounting the number of colonies on a plate. The estimate of the optimal count given by our method can be used to narrow the search for the best (optimal) dilution plate and saves time. The required inputs are the plate size, the microbial colony size, and the serial dilution factors. The proposed approach shows relative accuracy well within ±0.1log10 from data produced by computer simulations. The method maintains this accuracy even in the presence of dilution errors of up to 10% (for both the aliquot and diluent volumes), microbial counts between 10(4) and 10(12) colony-forming units, dilution ratios from 2 to 100, and plate size to colony size ratios between 6.25 to 200.
Raman spectroscopy and pattern recognition techniques are used to develop a potential method to characterize wood by type. The test data consists of 98 Raman spectra of temperate softwoods and hardwoods, and Brazilian and Honduran tropical woods. A genetic algorithm (GA) is used to extract features (i.e., line intensities at specific wavelengths) characteristic of the Raman profile of each wood-type. The spectral features identified by the pattern recognition GA allow the wood samples to cluster by type in a plot of the two largest principal components of the data. Because principal components maximize variance, the bulk of the information encoded by these spectral features is about differences between wood types. The predictive ability of the descriptors identified by the pattern recognition GA and the principal component map associated with them is validated using an external prediction set consisting of tropical woods and temperate hard and softwoods.
We
report the successful use of colorimetric arrays to identify
chemical warfare agents (CWAs). Methods were developed to interpret
and analyze a 73-indicator array with an entirely automated workflow.
Using a cross-validated first-nearest-neighbor algorithm for assessing
detection and identification performances on 632 exposures, at 30
min postexposure we report, on average, 78% correct chemical identification,
86% correct class-level identification, and 96% correct red light/green
light (agent versus non-agent) detection. Of 174 total independent
agent test exposures, 164 were correctly identified from a 30 min
exposure in the red light/green light context, yielding a 94% correct
identification of CWAs. Of 149 independent non-agent exposures, 139
were correctly identified at 30 min in the red light/green light context,
yielding a 7% false alarm rate. We find that this is a promising approach
for the development of a miniaturized, field-portable analytical equipment
suitable for soldiers and first responders.
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