In this article, network science is discussed from a methodological perspective, and two central theses are defended. The first is that network science exploits the very properties that make a system complex. Rather than using idealization techniques to strip those properties away, as is standard practice in other areas of science, network science brings them to the fore, and uses them to furnish new forms of explanation. The second thesis is that network representations are particularly helpful in explaining the properties of non-decomposable systems. Where part-whole decomposition is not possible, network science provides a much-needed alternative method of compressing information about the behavior of complex systems, and does so without succumbing to problems associated with combinatorial explosion. The article concludes with a comparison between the uses of network representation analyzed in the main discussion, and an entirely distinct use of network representation that has recently been discussed in connection with mechanistic modeling.

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Nervous systems process information. This platitude contains an interesting ambiguity between multiple senses of the term "information."According to a popular thought, the ambiguity is best resolved by reserving semantic concepts of information for the explication of neural activity at a high level of organization, and quantitative concepts of information for the explication of neural activity at a low level of organization. This article articulates the justification behind this view, and concludes that it is an oversimplification. An analysis of the meaning of claims about Shannon information rates in the spiking activity of neurons is then developed.On the basis of that analysis, it is shown that quantitative conceptions of information are more intertwined with semantic concepts than they seem to be, and, partially for that reason, are also more philosophically interesting.