Unforeseen interactions of dams and declining water availability have formed new obstacles to recovering endemic and endangered big‐river fishes. During a recent trend of drying climate and declining reservoir water levels in the Southwestern United States, a large waterfall has formed on two separate occasions (1989–1995 and 2001–present) in the transition zone between the San Juan River and Lake Powell reservoir because of deposited sediments. Since recovery plans for two large‐bodied endangered fish species, razorback sucker (Xyrauchen texanus) and Colorado pikeminnow (Ptychocheilus lucius), include annual stockings in the San Juan River, this waterfall potentially blocks upstream movement of individuals that moved downstream from the river into the reservoir. To quantify the temporal variation in abundance of endangered fishes aggregating downstream of the waterfall and determine population demographics, we remotely monitored and sampled in spring 2015, 2016, and 2017 when these fish were thought to move upstream to spawn. Additionally, we used an open population model applied to tagged fish detected in 2017 to estimate population sizes. Colorado pikeminnow were so infrequently encountered (<30 individuals) that population estimates were not performed. Razorback sucker captures from sampling (335), and detections from remote monitoring (943) showed high abundance across all 3 years. The razorback sucker population estimate for 2017 alone was 755 individuals and, relative to recent population estimates ranging from ~2,000 to ~4,000 individuals, suggests that a substantial population exists seasonally downstream of this barrier. Barriers to fish movement in rivers above reservoirs are not unique; thus, the formation of this waterfall exemplifies how water development and hydrology can interact to cause unforeseen changes to a riverscape.

Reservoirs and associated river fragments are novel ecosystems not experienced by fishes in their evolutionary history, yet they are now commonplace across the globe. Understanding how fishes use these novel habitats is vital to conservation efforts in contemporary riverscapes. Movement patterns of the endangered razorback sucker (Xyrauchen texanus) synthesized from tagging efforts in the upper Colorado River basin, USA, illustrate the applications of tagging technology and data sharing by multiple agencies to better understand the spatial ecology of large river fishes. Tagging studies between 2014 and 2018 in Lake Powell and its two main tributary rivers, the Colorado (unfragmented) and San Juan (waterfall‐fragmented), were used to quantify movement of razorback sucker within this river–reservoir habitat complex. In addition, facilitated translocations of fish upstream of a waterfall barrier in the San Juan River were assessed in 2016–2017. Extensive movement of fish occurred within and across river and reservoir habitats. Of 722 fish captured in the Colorado River arm of Lake Powell, 36% of re‐encounters occurred upstream in the Colorado or Green rivers, or fish dispersed through the reservoir and were detected in the San Juan River arm. Fourteen fish moved more than 600 km. In the San Juan arm of the reservoir, 29% and 20% of fish in 2017 and 2018, respectively, had moved ~30–40 km upstream below the waterfall in the San Juan River within a year. In 2016–2017, 303 fish were translocated upstream of the waterfall into the San Juan River, but 80% were re‐encountered downstream of the waterfall within a year. Long‐distance movements by razorback sucker were common within and among rivers and reservoirs illustrating how large river fish, in general, might maintain population connectivity in highly altered ecosystems.

River systems throughout arid regions worldwide have been heavily impacted by human activities, resulting in long-term ecological consequences. The lower Pecos River in the Trans-Pecos region of Texas is no exception, having undergone anthropogenic changes that include decreased flow, elevated salinity, species loss and species invasion. We compared historical and contemporary fish assemblage attributes from the Pecos River at local (site-specific) and regional (Trans-Pecos region) scales across a 24-year time period. Fish assemblage data were collected in October 1987 and 2011, by seining at 15 sites spanning 430 km of the river in Texas. Additionally, we examined contemporary environmental conditions to determine species-environment relationships. We found that fish assemblages were significantly different between time periods, likely due to increased salinisation in the upper half of the study region. Decreased species richness, species replacement and increases in euryhaline species were documented in the upstream sites. Freshwater springs lower the salinity and maintain flows in the downstream reach, allowing for maintenance of the native fish fauna. Careful management of regional aquifers, irrigation practices and petroleum waste water will be necessary for protecting biodiversity and environmental flows in the lower Pecos River.

We examined riverine desert fish assemblages in the Chihuahuan Desert, U.S.A. at multiple spatial scales of similarity to assess long‐term changes to assemblage distinctiveness, identify individual species responsible for changes, and determine the importance of geographic context and species resolution in interpreting patterns of change. We used a well‐documented historical data set on fish distribution and abundance, and recent collections of fishes that provided a paired analytical design across 36 localities spanning nearly 3 decades. Patterns of faunal homogenisation and differentiation were assessed at basin‐wide, sub‐basin and river‐reach scales with species occurrence and relative abundance data. Individual species responses were examined to identify the drivers of assemblage change across time. Patterns of assemblage similarity varied across spatial scales and produced seemingly incongruous trends across time. Assemblage distinctiveness depended on the spatial extent of the analyses, the geographical structuring of the fish assemblages, and whether occurrence or relative abundance data were used. These dependencies led to interesting and conflicting patterns of homogenisation and differentiation. The Rio Grande sub‐basin showed strong homogenisation with convergence between upstream and downstream reaches that corresponded to declining water quality and quantity from the Rio Conchos in Mexico. In contrast, the Pecos River sub‐basin showed strong differentiation between upstream and downstream reaches that corresponded to the successful colonisation and spread of the non‐native gulf killifish (Fundulus grandis) in the upper reach, where water quantity and quality have declined. Spatial variability in fish assemblages and their degree of change from historical conditions were largely congruent with anthropogenic modifications to the flow regime and variability in the success of invasive gulf killifish in the basin. The use of species occurrence as opposed to relative abundance data, and the spatial scale of analysis are crucial choices in studies of faunal homogenisation and differentiation, and we have demonstrated how these choices lead to variable results for our study system. Our multi‐scale approach and examination of individual species responses identified the ultimate drivers of these differences and illustrated the importance of scale‐dependent effects and geographical context on patterns of assemblage distinctiveness, especially with regard to species invasion, species loss and relative abundance shifts.

The cover image is based on the Research Article Waterfall formation at a desert river‐reservoir delta isolates endangered fishes, by Charles N. Cathcart et al., https://doi.org/10.1002/rra.3341. Photo credit: Mark McKinstry.