Recent reports have described the isolation and analysis of living microbes and/or DNA fragments from halite crystals of significant geological age. This manuscript describes the isolation of six living strains of halophilic Archaea from Cretaceous (121-112 MYA) halite crystals. These 6 live strains represent the oldest Archaea isolated to date. This manuscript also presents the first isolation of representatives from two different archaeal genera in a single event. The data presented show that the organisms that inhabited these hypersaline environments today are similar to those present during the Cretaceous age. Considering the number of ancient samples that have now yielded living microbes or DNA fragments the evidence for long-term survival of microbes (at least within halite) is becoming increasingly definitive. While there are obviously still other trapped microbes to find, it may now be time to begin investigating the implications of these ancient microbes and the mechanisms that foster long-term survival.
The isolation of living microorganisms from primary 250-million-year-old (MYA) salt crystals has been questioned by several researchers. The most intense discussion has arisen from questions about the texture and age of the crystals used, the ability of organisms to survive 250 million years when exposed to environmental factors such as radiation and the close similarity between 16S rRNA sequences in the Permian and modern microbes. The data in this manuscript are not meant to provide support for the antiquity of the isolated bacterial strains. Rather, the data presents several comparisons between the Permian microbes and other isolates to which they appear related. The analyses include whole cell fatty acid profiling, DNA-DNA hybridizations, ribotyping, and random amplified polymorphic DNA amplification (RAPD). These data show that the Permian strains, studied here, differ significantly from their more modern relatives. These differences are accumulating in both phenotypic and molecular areas of the cells. At the fatty acid level the differences are approaching but have not reached separate species status. At the molecular level the variation appears to be distributed across the genome and within the gene regions flanking the highly conserved 16S rRNA itself. The data show that these bacteria are not identical and help to rule out questions of contamination by putatively modern strains.
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