The central Appalachian shale barrens, a globally unique habitat type restricted to the eastern United States, presents an insular and physiologically stressful environment with sparse vegetation and extreme ground surface and air temperatures. Despite the high levels of plant species endemism within these systems, information on invertebrate communities and habitat preferences is extremely limited. Through this study, we aimed to better understand a shale barren arthropod community, microhabitat selection, and the influence of habitat characteristics and climatic factors. We employed pitfall traps to sample epigeic arthropods during the 2016 growing season in a shale barren habitat. Arthropod community composition was driven by overstory trees, mediated through accumulated leaf litter and availability of shaded microhabitats. Ambient air temperature also influenced the surface activity of various taxa with spiders decreasing at higher temperatures and ants, crickets, flies, and harvestmen all increasing in relative abundance. Habitat integrity of the central Appalachian shale barrens is threatened by forest succession and mesophication, encroaching invasive plant species, and rising ambient air temperatures, all of which can alter the extent of overstory vegetation and availability of shaded microhabitats. These biotic and physical pressures will subsequently affect epigeic arthropod community composition, depending on adaptive capacity of individual taxa. To the authors’ knowledge, these findings constitute only the second published work on arthropod communities and the first to focus on epigeic taxa in this globally rare habitat type. Continued conservation of these unique, insular habitats and their adapted inhabitants requires a multifaceted approach that considers current and future conditions.