Growing evidence shows that epigenetic mechanisms contribute to complex traits, with implications across many fields of biology. In plant ecology, recent studies have attempted to merge ecological experiments with epigenetic analyses to elucidate the contribution of epigenetics to plant phenotypes, stress responses, adaptation to habitat, and range distributions. While there has been some progress in revealing the role of epigenetics in ecological processes, studies with non-model species have so far been limited to describing broad patterns based on anonymous markers of DNA methylation. In contrast, studies with model species have benefited from powerful genomic resources, which contribute to a more mechanistic understanding but have limited ecological realism. Understanding the significance of epigenetics for plant ecology requires increased transfer of knowledge and methods from model species research to genomes of evolutionarily divergent species, and examination of responses to complex natural environments at a more mechanistic level. This requires transforming genomics tools specifically for studying non-model species, which is challenging given the large and often polyploid genomes of plants. Collaboration among molecular geneticists, ecologists and bioinformaticians promises to enhance our understanding of the mutual links between genome function and ecological processes.

Our results give important insights into the potential drivers of among- and within-species variation in HP receipt. They also highlight the value of explorations of patterns at the intraspecific level, which can ultimately shed light on plant-pollinator-mediated selection in diverse plant communities.

Summary• Understanding how pollination affects plant reproductive success and how changes in pollination service affect plant populations, communities and ecosystems is of increasing concern. Yet supplemental hand-pollination traditionally used to assess pollen limitation is prohibitive for large-scale comparative work. Moreover, it does not differentiate between quality and quantity aspects of pollen limitation, and it may suffer from confounds of postpollination processes such as resource availability to fill seeds.• Here, we highlight pollen tubes as the functional link between pollen arrival and seed production and suggest that consideration of pollen tubes leads to a better depiction of limitation at the pre-zygotic (pollination) phase of sexual reproduction.• We assessed the rigor of piecewise regression to analyze the relationship between the numbers of pollen grains and pollen tubes observed in nonmanipulated wilted flowers. We illustrate how parameters obtained from this analysis provide quantitative insight into the relative relevance of the quantity and quality of pollen receipt in limiting natural pollination success, and can facilitate comparisons among data sets.• This nonmanipulative method opens up new opportunities for rigorous assessment of the relative importance of the quantity and quality of pollination in limiting plant reproduction, especially from a community-wide perspective.