This paper presents the results of geoarchaeological and geochronological investigations at Con Moong Cave, North Vietnam. Beneath the published, terminal Pleistocene sequence, recent excavations have uncovered a ~5 m stratigraphic sequence containing flaked stone artifacts and sedimentary features that indicate extensive post‐depositional change. As the effects of tropical conditions on Pleistocene cave sediments are poorly resolved, a range of complementary techniques was selected to reconstruct the nature of on‐site sedimentation and occupation, while assessing the taphonomy of archaeological and palaeoecological materials. Our approach incorporates microstratigraphic, geochemical and sedimentological analyses, using optically stimulated luminescence (OSL) dating to estimate the time of sediment deposition in the cave. This case study has broad application to tropical zones worldwide. Sedimentation began in early Marine Isotope Stage (MIS) 4, while micromorphologically observed human occupation commenced before 42 thousand years ago (ka). By placing our results within the context of published, high‐resolution regional records of climate, we demonstrate that on‐site rhythms of Pleistocene occupation correlated with environmental changes in the region. During MIS 3, episodic abandonment of the site coincided with periods of drier conditions, while rapid climate fluctuations in MIS 2 corresponded with short‐lived occupation events and a switch to predominantly geogenic deposition in the cave.

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North Vietnam is situated on a major route of Pleistocene hominin dispersal in East Asia, and the area's karstic caves preserve many prehistoric shell middens. Fossil and genomic evidence suggest a complex human history in this region and more widely across Southeast Asia and southern China, but related archaeological investigations are hampered by challenging site stratigraphies. Recent investigations of shell middens in other geographical settings have revealed the microstratigraphic complexity of these anthropogenic deposits. But caves promote distinctive site formation processes, while tropical climates may catalyse geomorphic and diagenetic changes. These environmental factors complicate the interpretation of North Vietnam's shell middens and constraining their effects upon the formation, preservation and destruction of these sites is critical to understanding the archaeology of this region. We examine two archaeological cave sites, dated to the Late Pleistocene and located in the limestone uplands surrounding the Hanoi Basin. Each contains multiple shell midden layers associated with prehistoric occupation and burials. Using thin-section micromorphology (microstratigraphy), we reconstruct the depositional and post-depositional histories of these sites, presenting a geoarchaeological framework of interpretation that is applicable to shell middens in mainland Southeast Asia and tropical zones more widely. This work represents a further step towards improving our understanding of prehistoric human dispersals and adaptations in this region. This article is part of the theme issue ‘Tropical forests in the deep human past’.

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The originally published version of this paper used the term 'North Vietnam' to refer to northern Vietnam and not the former Democratic Republic of Vietnam. For clarity, this term has been changed to 'northern Vietnam'.